diff qiime2__composition__ancombc2_visualizer.xml @ 0:17866bd6d1d4 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit b1fccfb38b4873cd4699743033449014a2978e7d

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__composition__ancombc2_visualizer.xml	Mon May 05 18:41:32 2025 +0000
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+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2025, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2025.4.0)
+for:
+    qiime2 (version: 2025.4.0)
+-->
+<tool name="qiime2 composition ancombc2-visualizer" id="qiime2__composition__ancombc2_visualizer" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
+    <description>Visualize ANCOMBC2 output.</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
+    </requirements>
+    <version_command>q2galaxy version composition</version_command>
+    <command detect_errors="exit_code">q2galaxy run composition ancombc2_visualizer '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <param name="data" type="data" format="qza" label="data: FeatureData[ANCOMBC2Output]" help="[required]  The ANCOMBC2 output to visualize.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureData[ANCOMBC2Output]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[ANCOMBC2Output]']</validator>
+        </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <param name="taxonomy" type="data" format="qza" optional="true" label="taxonomy: FeatureData[Taxonomy]" help="[optional]  The taxonomy associated with the features present in the ANCOMBC2 data.">
+                <options options_filter_attribute="metadata.semantic_type">
+                    <filter type="add_value" value="FeatureData[Taxonomy]"/>
+                </options>
+                <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Taxonomy]']</validator>
+            </param>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: composition ancombc2-visualizer
+========================================
+Visualize ANCOMBC2 output.
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Displays ANCOMBC2 Log-Fold Change values in a barplot and allows filtering based on p-value and standard error. If a taxonomy is provided, features can be filtered by taxonomy using an interactive tree.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>