# HG changeset patch # User q2d2 # Date 1661800883 0 # Node ID a3eb5e92ffb35cce507217b2a06baf70536d7a0a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__cutadapt commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 diff -r 000000000000 -r a3eb5e92ffb3 qiime2__cutadapt__trim_paired.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__cutadapt__trim_paired.xml Mon Aug 29 19:21:23 2022 +0000 @@ -0,0 +1,118 @@ + + + + + Find and remove adapters in demultiplexed paired-end sequences. + + quay.io/qiime2/core:2022.8 + + q2galaxy version cutadapt + q2galaxy run cutadapt trim_paired '$inputs' + + + + + + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]'] + +
+ + + + + + + value is not None and len(value) > 0 + + + + + + + + value is not None and len(value) > 0 + + + + + + + + value is not None and len(value) > 0 + + + + + + + + value is not None and len(value) > 0 + + + + + + + + value is not None and len(value) > 0 + + + + + + + + value is not None and len(value) > 0 + + + + + + + + + + +
+
+ + + + + +QIIME 2: cutadapt trim-paired +============================= +Find and remove adapters in demultiplexed paired-end sequences. + + +Outputs: +-------- +:trimmed_sequences.qza: The resulting trimmed sequences. + +| + +Description: +------------ +Search demultiplexed paired-end sequences for adapters and remove them. The parameter descriptions in this method are adapted from the official cutadapt docs - please see those docs at https://cutadapt.readthedocs.io for complete details. + + +| + + + + 10.14806/ej.17.1.200 + 10.1038/s41587-019-0209-9 + +
diff -r 000000000000 -r a3eb5e92ffb3 test-data/.gitkeep