comparison qiime2__dada2__denoise_ccs.xml @ 8:3e2a146511b0 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__dada2 commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

7:4d29020147f3

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.7.0)
for:
    qiime2 (version: 2025.7.0)
-->
<tool name="qiime2 dada2 denoise-ccs" id="qiime2__dada2__denoise_ccs" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
    <description>Denoise and dereplicate single-end Pacbio CCS</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
    </requirements>
    <version_command>q2galaxy version dada2</version_command>
    <command detect_errors="exit_code">q2galaxy run dada2 denoise_ccs '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>

    </inputs>
    <outputs>
        <data name="table" format="qza" label="${tool.name} on ${on_string}: table.qza" from_work_dir="table.qza"/>
        <data name="representative_sequences" format="qza" label="${tool.name} on ${on_string}: representative_sequences.qza" from_work_dir="representative_sequences.qza"/>
        <data name="denoising_stats" format="qza" label="${tool.name} on ${on_string}: denoising_stats.qza" from_work_dir="denoising_stats.qza"/>
    </outputs>
    <tests/>
    <help>
QIIME 2: dada2 denoise-ccs
==========================

Outputs:
--------
:table.qza: The resulting feature table.
:representative_sequences.qza: The resulting feature sequences. Each feature in the feature table will be represented by exactly one sequence.
:denoising_stats.qza: <no description>

|  

Description:
------------

8:3e2a146511b0

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.10.0)
for:
    qiime2 (version: 2025.10.0)
-->
<tool name="qiime2 dada2 denoise-ccs" id="qiime2__dada2__denoise_ccs" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
    <description>Denoise and dereplicate single-end Pacbio CCS</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
    </requirements>
    <version_command>q2galaxy version dada2</version_command>
    <command detect_errors="exit_code">q2galaxy run dada2 denoise_ccs '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>

    </inputs>
    <outputs>
        <data name="table" format="qza" label="${tool.name} on ${on_string}: table.qza" from_work_dir="table.qza"/>
        <data name="representative_sequences" format="qza" label="${tool.name} on ${on_string}: representative_sequences.qza" from_work_dir="representative_sequences.qza"/>
        <data name="denoising_stats" format="qza" label="${tool.name} on ${on_string}: denoising_stats.qza" from_work_dir="denoising_stats.qza"/>
        <data name="base_transition_stats" format="qza" label="${tool.name} on ${on_string}: base_transition_stats.qza" from_work_dir="base_transition_stats.qza"/>
    </outputs>
    <tests/>
    <help>
QIIME 2: dada2 denoise-ccs
==========================

Outputs:
--------
:table.qza: The resulting feature table.
:representative_sequences.qza: The resulting feature sequences. Each feature in the feature table will be represented by exactly one sequence.
:denoising_stats.qza: A table listing per-sample read retention counts and percentages after each stage of the pipeline.
:base_transition_stats.qza: A table listing the transition rates of each ordered pair of nucleotides at each quality score.

|  

Description:
------------