Mercurial > repos > q2d2 > qiime2__dada2__denoise_ccs
changeset 8:3e2a146511b0 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__dada2 commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
| author | q2d2 |
|---|---|
| date | Sat, 01 Nov 2025 17:10:28 +0000 |
| parents | 4d29020147f3 |
| children | |
| files | qiime2__dada2__denoise_ccs.xml test-data/denoise_paired.test0.demux-paired.qza test-data/denoise_single.test0.demux-single.qza |
| diffstat | 3 files changed, 7 insertions(+), 5 deletions(-) [+] |
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--- a/qiime2__dada2__denoise_ccs.xml Tue Jul 15 21:48:32 2025 +0000 +++ b/qiime2__dada2__denoise_ccs.xml Sat Nov 01 17:10:28 2025 +0000 @@ -6,17 +6,17 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2025.7.0) + q2galaxy (version: 2025.10.0) for: - qiime2 (version: 2025.7.0) + qiime2 (version: 2025.10.0) --> -<tool name="qiime2 dada2 denoise-ccs" id="qiime2__dada2__denoise_ccs" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 dada2 denoise-ccs" id="qiime2__dada2__denoise_ccs" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> <description>Denoise and dereplicate single-end Pacbio CCS</description> <xrefs> <xref type="bio.tools">qiime2</xref> </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2025.7</container> + <container type="docker">quay.io/qiime2/amplicon:2025.10</container> </requirements> <version_command>q2galaxy version dada2</version_command> <command detect_errors="exit_code">q2galaxy run dada2 denoise_ccs '$inputs'</command> @@ -80,6 +80,7 @@ <data name="table" format="qza" label="${tool.name} on ${on_string}: table.qza" from_work_dir="table.qza"/> <data name="representative_sequences" format="qza" label="${tool.name} on ${on_string}: representative_sequences.qza" from_work_dir="representative_sequences.qza"/> <data name="denoising_stats" format="qza" label="${tool.name} on ${on_string}: denoising_stats.qza" from_work_dir="denoising_stats.qza"/> + <data name="base_transition_stats" format="qza" label="${tool.name} on ${on_string}: base_transition_stats.qza" from_work_dir="base_transition_stats.qza"/> </outputs> <tests/> <help> @@ -92,7 +93,8 @@ -------- :table.qza: The resulting feature table. :representative_sequences.qza: The resulting feature sequences. Each feature in the feature table will be represented by exactly one sequence. -:denoising_stats.qza: <no description> +:denoising_stats.qza: A table listing per-sample read retention counts and percentages after each stage of the pipeline. +:base_transition_stats.qza: A table listing the transition rates of each ordered pair of nucleotides at each quality score. |