# HG changeset patch
# User q2d2
# Date 1762017041 0
# Node ID 757ff40d49bfa11a9967bf49be238c854837947f

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__dada2 commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r 000000000000 -r 757ff40d49bf qiime2__dada2__plot_base_transitions.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__dada2__plot_base_transitions.xml	Sat Nov 01 17:10:41 2025 +0000
@@ -0,0 +1,67 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2025, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2025.10.0)
+for:
+    qiime2 (version: 2025.10.0)
+-->
+<tool name="qiime2 dada2 plot-base-transitions" id="qiime2__dada2__plot_base_transitions" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
+    <description>DADA2 diagnostic statistics</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
+    </requirements>
+    <version_command>q2galaxy version dada2</version_command>
+    <command detect_errors="exit_code">q2galaxy run dada2 plot_base_transitions '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <param name="base_transition_stats" type="data" format="qza" label="base_transition_stats: DADA2BaseTransitionStats" help="[required]  Dada2 Base transition statistics.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="DADA2BaseTransitionStats"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['DADA2BaseTransitionStats']</validator>
+        </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <param name="nominalq" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="nominalq: Bool" help="[default: No]  Sets the nominalq line of the vizualization"/>
+            <param name="error_in" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="error_in: Bool" help="[default: No]  Sets the input error line of the vizualization"/>
+            <param name="error_out" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="error_out: Bool" help="[default: Yes]  Sets the output error line of the vizualization"/>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: dada2 plot-base-transitions
+====================================
+DADA2 diagnostic statistics
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Generates dada2 output stat vizualizations
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/nmeth.3869</citation>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r 757ff40d49bf test-data/denoise_paired.test0.demux-paired.qza
Binary file test-data/denoise_paired.test0.demux-paired.qza has changed
diff -r 000000000000 -r 757ff40d49bf test-data/denoise_single.test0.demux-single.qza
Binary file test-data/denoise_single.test0.demux-single.qza has changed