Mercurial > repos > q2d2 > qiime2__deblur__denoise_16s
comparison qiime2__deblur__denoise_16S.xml @ 4:ab9ed5ac604c draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit c7e80dcda727ce63b42aa8a946e9330310929797
| author | q2d2 |
|---|---|
| date | Mon, 03 Jun 2024 23:17:53 +0000 |
| parents | d2ba73cf503d |
| children | fec8b0edda39 |
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| 3:d2ba73cf503d | 4:ab9ed5ac604c |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2024.2.1) | 9 q2galaxy (version: 2024.5.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2024.2.0) | 11 qiime2 (version: 2024.5.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 deblur denoise-16S" id="qiime2__deblur__denoise_16S" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 deblur denoise-16S" id="qiime2__deblur__denoise_16S" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Deblur sequences using a 16S positive filter.</description> | 14 <description>Deblur sequences using a 16S positive filter.</description> |
| 15 <requirements> | 15 <requirements> |
| 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> | 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> |
| 17 </requirements> | 17 </requirements> |
| 18 <version_command>q2galaxy version deblur</version_command> | 18 <version_command>q2galaxy version deblur</version_command> |
| 19 <command detect_errors="exit_code">q2galaxy run deblur denoise_16S '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run deblur denoise_16S '$inputs'</command> |
| 20 <configfiles> | 20 <configfiles> |
| 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> | 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 22 </configfiles> | 22 </configfiles> |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be denoised."> | 24 <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be denoised."> |
| 25 <options options_filter_attribute="metadata.semantic_type"> | 25 <options options_filter_attribute="metadata.semantic_type"> |
| 26 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> | |
| 27 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/> | |
| 26 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> | 28 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> |
| 27 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/> | |
| 28 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> | |
| 29 </options> | 29 </options> |
| 30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> | 30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> |
| 31 </param> | 31 </param> |
| 32 <param name="trim_length" type="integer" value="" label="trim_length: Int" help="[required] Sequence trim length, specify -1 to disable trimming."/> | 32 <param name="trim_length" type="integer" value="" label="trim_length: Int" help="[required] Sequence trim length, specify -1 to disable trimming."/> |
| 33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | 33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> |