Mercurial > repos > q2d2 > qiime2__deblur__denoise_16s
comparison qiime2__deblur__denoise_16S.xml @ 7:cb5e12f7c99f draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0
| author | q2d2 |
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| date | Tue, 15 Jul 2025 21:48:46 +0000 |
| parents | 71201a5b1513 |
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| 6:71201a5b1513 | 7:cb5e12f7c99f |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2025.4.0) | 9 q2galaxy (version: 2025.7.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2025.4.0) | 11 qiime2 (version: 2025.7.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 deblur denoise-16S" id="qiime2__deblur__denoise_16S" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 deblur denoise-16S" id="qiime2__deblur__denoise_16S" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Deblur sequences using a 16S positive filter.</description> | 14 <description>Deblur sequences using a 16S positive filter.</description> |
| 15 <xrefs> | 15 <xrefs> |
| 16 <xref type="bio.tools">qiime2</xref> | 16 <xref type="bio.tools">qiime2</xref> |
| 17 </xrefs> | 17 </xrefs> |
| 18 <requirements> | 18 <requirements> |
| 19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container> | 19 <container type="docker">quay.io/qiime2/amplicon:2025.7</container> |
| 20 </requirements> | 20 </requirements> |
| 21 <version_command>q2galaxy version deblur</version_command> | 21 <version_command>q2galaxy version deblur</version_command> |
| 22 <command detect_errors="exit_code">q2galaxy run deblur denoise_16S '$inputs'</command> | 22 <command detect_errors="exit_code">q2galaxy run deblur denoise_16S '$inputs'</command> |
| 23 <configfiles> | 23 <configfiles> |
| 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> | 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 25 </configfiles> | 25 </configfiles> |
| 26 <inputs> | 26 <inputs> |
| 27 <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be denoised."> | 27 <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be denoised."> |
| 28 <options options_filter_attribute="metadata.semantic_type"> | 28 <options options_filter_attribute="metadata.semantic_type"> |
| 29 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> | 29 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> |
| 30 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> | |
| 30 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/> | 31 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/> |
| 31 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> | |
| 32 </options> | 32 </options> |
| 33 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> | 33 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> |
| 34 </param> | 34 </param> |
| 35 <param name="trim_length" type="integer" value="" label="trim_length: Int" help="[required] Sequence trim length, specify -1 to disable trimming."/> | 35 <param name="trim_length" type="integer" value="" label="trim_length: Int" help="[required] Sequence trim length, specify -1 to disable trimming."/> |
| 36 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | 36 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> |