diff qiime2__deblur__denoise_16S.xml @ 3:d2ba73cf503d draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

--- a/qiime2__deblur__denoise_16S.xml	Thu Jun 08 19:35:45 2023 +0000
+++ b/qiime2__deblur__denoise_16S.xml	Thu Apr 25 20:54:54 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 deblur denoise-16S" id="qiime2__deblur__denoise_16S" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 deblur denoise-16S" id="qiime2__deblur__denoise_16S" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Deblur sequences using a 16S positive filter.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version deblur</version_command>
     <command detect_errors="exit_code">q2galaxy run deblur denoise_16S '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required]  The demultiplexed sequences to be denoised.">
@@ -38,7 +38,6 @@
             <param name="indel_max" type="integer" value="3" label="indel_max: Int" help="[default: 3]  Maximum number of insertion/deletions."/>
             <param name="min_reads" type="integer" value="10" label="min_reads: Int" help="[default: 10]  Retain only features appearing at least min_reads times across all samples in the resulting feature table."/>
             <param name="min_size" type="integer" value="2" label="min_size: Int" help="[default: 2]  In each sample, discard all features with an abundance less than min_size."/>
-            <param name="jobs_to_start" type="integer" value="1" label="jobs_to_start: Int" help="[default: 1]  Number of jobs to start (if to run in parallel)."/>
             <param name="hashed_feature_ids" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="hashed_feature_ids: Bool" help="[default: Yes]  If true, hash the feature IDs."/>
         </section>
     </inputs>