Mercurial > repos > q2d2 > qiime2__deblur__denoise_other
comparison qiime2__deblur__denoise_other.xml @ 2:61ee71aacf1c draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 65e4952f33eb335528e8553150e9097e5ea8f556
| author | q2d2 |
|---|---|
| date | Thu, 08 Jun 2023 19:35:49 +0000 |
| parents | 86e36a2b44b0 |
| children | 8b5a4afd4616 |
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| 1:86e36a2b44b0 | 2:61ee71aacf1c |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2022.11.1) | 9 q2galaxy (version: 2023.5.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2022.11.1) | 11 qiime2 (version: 2023.5.1) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 deblur denoise-other" id="qiime2__deblur__denoise_other" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 deblur denoise-other" id="qiime2__deblur__denoise_other" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Deblur sequences using a user-specified positive filter.</description> | 14 <description>Deblur sequences using a user-specified positive filter.</description> |
| 15 <requirements> | 15 <requirements> |
| 16 <container type="docker">quay.io/qiime2/core:2022.11</container> | 16 <container type="docker">quay.io/qiime2/core:2023.5</container> |
| 17 </requirements> | 17 </requirements> |
| 18 <version_command>q2galaxy version deblur</version_command> | 18 <version_command>q2galaxy version deblur</version_command> |
| 19 <command detect_errors="exit_code">q2galaxy run deblur denoise_other '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run deblur denoise_other '$inputs'</command> |
| 20 <configfiles> | 20 <configfiles> |
| 21 <inputs name="inputs" data_style="paths"/> | 21 <inputs name="inputs" data_style="paths"/> |
| 22 </configfiles> | 22 </configfiles> |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be denoised."> | 24 <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required] The demultiplexed sequences to be denoised."> |
| 25 <options options_filter_attribute="metadata.semantic_type"> | 25 <options options_filter_attribute="metadata.semantic_type"> |
| 26 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> | |
| 27 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> | 26 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> |
| 28 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/> | 27 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/> |
| 28 <filter type="add_value" value="SampleData[SequencesWithQuality]"/> | |
| 29 </options> | 29 </options> |
| 30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> | 30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator> |
| 31 </param> | 31 </param> |
| 32 <param name="reference_seqs" type="data" format="qza" label="reference_seqs: FeatureData[Sequence]" help="[required] Positive filtering database. Keep all sequences aligning to these sequences."> | 32 <param name="reference_seqs" type="data" format="qza" label="reference_seqs: FeatureData[Sequence]" help="[required] Positive filtering database. Keep all sequences aligning to these sequences."> |
| 33 <options options_filter_attribute="metadata.semantic_type"> | 33 <options options_filter_attribute="metadata.semantic_type"> |