Mercurial > repos > q2d2 > qiime2__deblur__denoise_other

changeset 5:816ca3000a39 draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:37:10 +0000
parents 27ba31d2202b
children
files qiime2__deblur__denoise_other.xml test-data/denoise_16S.test0.demux-filtered.qza test-data/visualize_stats.test0.deblur-stats.qza
diffstat 3 files changed, 8 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__deblur__denoise_other.xml	Mon Jun 03 23:17:50 2024 +0000
+++ b/qiime2__deblur__denoise_other.xml	Wed Oct 30 19:37:10 2024 +0000
@@ -6,14 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.5.0)
+    q2galaxy (version: 2024.10.0)
 for:
-    qiime2 (version: 2024.5.0)
+    qiime2 (version: 2024.10.1)
 -->
-<tool name="qiime2 deblur denoise-other" id="qiime2__deblur__denoise_other" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 deblur denoise-other" id="qiime2__deblur__denoise_other" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Deblur sequences using a user-specified positive filter.</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
     </requirements>
     <version_command>q2galaxy version deblur</version_command>
     <command detect_errors="exit_code">q2galaxy run deblur denoise_other '$inputs'</command>
@@ -23,8 +26,8 @@
     <inputs>
         <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required]  The demultiplexed sequences to be denoised.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
-                <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
Binary file test-data/denoise_16S.test0.demux-filtered.qza has changed
Binary file test-data/visualize_stats.test0.deblur-stats.qza has changed