changeset 2:bc1a46b06436 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:37:36 +0000
parents 84111e1c01f0
children
files qiime2__demux__partition_samples_single.xml test-data/emp_single.test0.sequences.qza test-data/summarize.test0.demux.qza
diffstat 3 files changed, 10 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__demux__partition_samples_single.xml	Mon Jun 03 23:18:20 2024 +0000
+++ b/qiime2__demux__partition_samples_single.xml	Wed Oct 30 19:37:36 2024 +0000
@@ -6,14 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.5.0)
+    q2galaxy (version: 2024.10.0)
 for:
-    qiime2 (version: 2024.5.0)
+    qiime2 (version: 2024.10.1)
 -->
-<tool name="qiime2 demux partition-samples-single" id="qiime2__demux__partition_samples_single" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 demux partition-samples-single" id="qiime2__demux__partition_samples_single" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Split demultiplexed sequence data into partitions.</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
     </requirements>
     <version_command>q2galaxy version demux</version_command>
     <command detect_errors="exit_code">q2galaxy run demux partition_samples_single '$inputs'</command>
@@ -21,11 +24,12 @@
         <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
-        <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality]" help="[required]  The demultiplexed sequences to partition.">
+        <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality¹ | JoinedSequencesWithQuality²]" help="[required]  The demultiplexed sequences to partition.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
             </options>
-            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[SequencesWithQuality]']</validator>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
             <param name="num_partitions" type="integer" min="1" optional="true" label="num_partitions: Int % Range(1, None)" help="[optional]  The number of partitions to split the demultiplexed sequences into. Defaults to partitioning into individual samples."/>
Binary file test-data/emp_single.test0.sequences.qza has changed
Binary file test-data/summarize.test0.demux.qza has changed