annotate qiime2__demux__subsample_single.xml @ 7:5f29bf108ba3 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2025, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.7.0)
for:
    qiime2 (version: 2025.7.0)
-->
<tool name="qiime2 demux subsample-single" id="qiime2__demux__subsample_single" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
    <description>Subsample single-end sequences without replacement.</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
    </requirements>
    <version_command>q2galaxy version demux</version_command>
    <command detect_errors="exit_code">q2galaxy run demux subsample_single '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>
    </configfiles>
    <inputs>
        <param name="sequences" type="data" format="qza" label="sequences: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality]" help="[required]  The demultiplexed sequences to be subsampled.">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
                <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
            </options>
            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
        </param>
        <param name="fraction" type="float" min="1e-06" max="0.999999" value="" label="fraction: Float % Range(0, 1, inclusive_start=False)" help="[required]  The fraction of sequences to retain in subsample."/>
        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
            <param name="drop_empty" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="drop_empty: Bool" help="[default: No]  Whether to drop empty samples."/>
        </section>
    </inputs>
    <outputs>
        <data name="subsampled_sequences" format="qza" label="${tool.name} on ${on_string}: subsampled_sequences.qza" from_work_dir="subsampled_sequences.qza"/>
    </outputs>
    <tests/>
    <help>
QIIME 2: demux subsample-single
===============================
Subsample single-end sequences without replacement.


Outputs:
--------
:subsampled_sequences.qza: The subsampled sequences.

|  

Description:
------------
Generate a random subsample of single-end sequences containing approximately the fraction of input sequences specified by the fraction parameter. The number of output samples will always be equal to the number of input samples, even if some of those samples contain no sequences after subsampling.


|  

</help>
    <citations>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>