diff qiime2__demux__tabulate_read_counts.xml @ 0:05d47d652efb draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__demux__tabulate_read_counts.xml	Thu Apr 25 20:56:11 2024 +0000
@@ -0,0 +1,59 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2024, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2024.2.1)
+for:
+    qiime2 (version: 2024.2.0)
+-->
+<tool name="qiime2 demux tabulate-read-counts" id="qiime2__demux__tabulate_read_counts" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
+    <description>Tabulate counts per sample</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
+    </requirements>
+    <version_command>q2galaxy version demux</version_command>
+    <command detect_errors="exit_code">q2galaxy run demux tabulate_read_counts '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <param name="sequences" type="data" format="qza" label="sequences: List[SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]]" help="[required]  One or more collections of demultiplexed sequences." multiple="true">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
+                <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
+                <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
+            </options>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="counts" format="qza" label="${tool.name} on ${on_string}: counts.qza" from_work_dir="counts.qza"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: demux tabulate-read-counts
+===================================
+Tabulate counts per sample
+
+
+Outputs:
+--------
+:counts.qza: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Generate a per-sample count of sequence reads.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>