# HG changeset patch
# User q2d2
# Date 1717456749 0
# Node ID 7ed55f1323eeb4eba17562c58286276270fb953e
# Parent  525d07dd31b2e17ee8f2d90b2258a703b8422919
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit c7e80dcda727ce63b42aa8a946e9330310929797

diff -r 525d07dd31b2 -r 7ed55f1323ee qiime2__diversity__beta.xml
--- a/qiime2__diversity__beta.xml	Thu Apr 25 20:56:59 2024 +0000
+++ b/qiime2__diversity__beta.xml	Mon Jun 03 23:19:09 2024 +0000
@@ -6,14 +6,14 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.2.1)
+    q2galaxy (version: 2024.5.0)
 for:
-    qiime2 (version: 2024.2.0)
+    qiime2 (version: 2024.5.0)
 -->
-<tool name="qiime2 diversity beta" id="qiime2__diversity__beta" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity beta" id="qiime2__diversity__beta" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
     <description>Beta diversity</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
     </requirements>
     <version_command>q2galaxy version diversity</version_command>
     <command detect_errors="exit_code">q2galaxy run diversity beta '$inputs'</command>
@@ -23,13 +23,13 @@
     <inputs>
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required]  The feature table containing the samples over which beta diversity should be computed.">
             <options options_filter_attribute="metadata.semantic_type">
-                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
                 <filter type="add_value" value="FeatureTable[Frequency]"/>
                 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
+                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
         </param>
-        <param name="metric" type="select" label="metric: Str % Choices('aitchison', 'braycurtis', 'canberra', 'canberra_adkins', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jaccard', 'jensenshannon', 'kulsinski', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule')">
+        <param name="metric" type="select" label="metric: Str % Choices('aitchison', 'braycurtis', 'canberra', 'canberra_adkins', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jaccard', 'jensenshannon', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule')">
             <option value="__q2galaxy__::literal::None">Selection required</option>
             <option value="aitchison">aitchison</option>
             <option value="braycurtis">braycurtis</option>
@@ -44,7 +44,6 @@
             <option value="hamming">hamming</option>
             <option value="jaccard">jaccard</option>
             <option value="jensenshannon">jensenshannon</option>
-            <option value="kulsinski">kulsinski</option>
             <option value="matching">matching</option>
             <option value="minkowski">minkowski</option>
             <option value="rogerstanimoto">rogerstanimoto</option>
diff -r 525d07dd31b2 -r 7ed55f1323ee test-data/alpha_correlation.test0.alpha-div-faith-pd.qza
Binary file test-data/alpha_correlation.test0.alpha-div-faith-pd.qza has changed
diff -r 525d07dd31b2 -r 7ed55f1323ee test-data/alpha_group_significance.test0.alpha-div-faith-pd.qza
Binary file test-data/alpha_group_significance.test0.alpha-div-faith-pd.qza has changed