# HG changeset patch
# User q2d2
# Date 1661801474 0
# Node ID e12bf91d8469ac66a5488631f3f60e95c78441bd

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1

diff -r 000000000000 -r e12bf91d8469 qiime2__diversity__beta_group_significance.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__diversity__beta_group_significance.xml	Mon Aug 29 19:31:14 2022 +0000
@@ -0,0 +1,86 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2022.8.1)
+for:
+    qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 diversity beta-group-significance" id="qiime2__diversity__beta_group_significance" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+    <description>Beta diversity group significance</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/core:2022.8</container>
+    </requirements>
+    <version_command>q2galaxy version diversity</version_command>
+    <command detect_errors="aggressive">q2galaxy run diversity beta_group_significance '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="paths"/>
+    </configfiles>
+    <inputs>
+        <param name="distance_matrix" type="data" format="qza" label="distance_matrix: DistanceMatrix" help="[required]  Matrix of distances between pairs of samples.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="DistanceMatrix"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['DistanceMatrix']</validator>
+        </param>
+        <conditional name="metadata">
+            <param name="type" type="select" label="metadata: MetadataColumn[Categorical]" help="[required]  Categorical sample metadata column.">
+                <option value="tsv" selected="true">Metadata from TSV</option>
+                <option value="qza">Metadata from Artifact</option>
+            </param>
+            <when value="tsv">
+                <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
+                <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true">
+                    <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator>
+                </param>
+            </when>
+            <when value="qza">
+                <param name="source" type="data" format="qza" label="Metadata Source"/>
+                <param name="column" type="text" label="Column Name">
+                    <validator type="empty_field"/>
+                </param>
+            </when>
+        </conditional>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <param name="method" type="select" label="method: Str % Choices('permanova', 'anosim', 'permdisp')" display="radio">
+                <option value="permanova" selected="true">permanova</option>
+                <option value="anosim">anosim</option>
+                <option value="permdisp">permdisp</option>
+            </param>
+            <param name="pairwise" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="pairwise: Bool" help="[default: No]  Perform pairwise tests between all pairs of groups in addition to the test across all groups. This can be very slow if there are a lot of groups in the metadata column."/>
+            <param name="permutations" type="integer" value="999" label="permutations: Int" help="[default: 999]  The number of permutations to be run when computing p-values."/>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: diversity beta-group-significance
+==========================================
+Beta diversity group significance
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Determine whether groups of samples are significantly different from one another using a permutation-based statistical test.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">https://doi.org/10.1111/j.1442-9993.2001.01070.pp.x</citation>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r e12bf91d8469 test-data/.gitkeep