# HG changeset patch
# User q2d2
# Date 1762017199 0
# Node ID 1313ba282b3966d7538c3d111ce362b5ea6a7826
# Parent  2e7aa115e88de01a3dca4f59f24e7e4c13d36220
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r 2e7aa115e88d -r 1313ba282b39 qiime2__diversity__beta_phylogenetic.xml
--- a/qiime2__diversity__beta_phylogenetic.xml	Tue Jul 15 21:50:43 2025 +0000
+++ b/qiime2__diversity__beta_phylogenetic.xml	Sat Nov 01 17:13:19 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.7.0)
+    q2galaxy (version: 2025.10.0)
 for:
-    qiime2 (version: 2025.7.0)
+    qiime2 (version: 2025.10.0)
 -->
-<tool name="qiime2 diversity beta-phylogenetic" id="qiime2__diversity__beta_phylogenetic" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity beta-phylogenetic" id="qiime2__diversity__beta_phylogenetic" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Beta diversity (phylogenetic)</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
     </requirements>
     <version_command>q2galaxy version diversity</version_command>
     <command detect_errors="exit_code">q2galaxy run diversity beta_phylogenetic '$inputs'</command>
@@ -27,8 +27,8 @@
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required]  The feature table containing the samples over which beta diversity should be computed.">
             <options options_filter_attribute="metadata.semantic_type">
                 <filter type="add_value" value="FeatureTable[Frequency]"/>
+                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
                 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
-                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
         </param>
diff -r 2e7aa115e88d -r 1313ba282b39 test-data/alpha_correlation.test0.alpha-div-faith-pd.qza
Binary file test-data/alpha_correlation.test0.alpha-div-faith-pd.qza has changed
diff -r 2e7aa115e88d -r 1313ba282b39 test-data/alpha_group_significance.test0.alpha-div-faith-pd.qza
Binary file test-data/alpha_group_significance.test0.alpha-div-faith-pd.qza has changed