changeset 9:a592ae004989 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit 36ec48f8c55799a0c963733df13da30f19b1bdf3
author q2d2
date Wed, 28 Jan 2026 16:21:41 +0000
parents 66dbb2a55bc5
children
files qiime2__diversity_lib__beta_passthrough.xml test-data/alpha_passthrough.test0.feature-table.qza test-data/beta_passthrough.test0.feature-table.qza test-data/beta_passthrough.test1.feature-table.qza test-data/beta_passthrough.test2.feature-table.qza test-data/beta_passthrough.test3.feature-table.qza test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza test-data/beta_phylogenetic_passthrough.test0.feature-table.qza test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza test-data/beta_phylogenetic_passthrough.test1.feature-table.qza test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza test-data/beta_phylogenetic_passthrough.test2.feature-table.qza test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza test-data/beta_phylogenetic_passthrough.test3.feature-table.qza test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza test-data/beta_phylogenetic_passthrough.test4.feature-table.qza test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza test-data/beta_phylogenetic_passthrough.test5.feature-table.qza test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza test-data/beta_phylogenetic_passthrough.test6.feature-table.qza test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza test-data/bray_curtis.test0.feature-table.qza test-data/bray_curtis.test1.feature-table.qza test-data/bray_curtis.test2.feature-table.qza test-data/faith_pd.test0.feature-table.qza test-data/faith_pd.test0.phylogeny.qza test-data/jaccard.test0.feature-table.qza test-data/jaccard.test1.feature-table.qza test-data/jaccard.test2.feature-table.qza test-data/observed_features.test0.feature-table.qza test-data/pielou_evenness.test0.feature-table.qza test-data/pielou_evenness.test1.feature-table.qza test-data/shannon_entropy.test0.feature-table.qza test-data/shannon_entropy.test1.feature-table.qza test-data/shannon_entropy.test2.feature-table.qza test-data/unweighted_unifrac.test0.feature-table.qza test-data/unweighted_unifrac.test0.phylogeny.qza test-data/unweighted_unifrac.test1.feature-table.qza test-data/unweighted_unifrac.test1.phylogeny.qza test-data/unweighted_unifrac.test2.feature-table.qza test-data/unweighted_unifrac.test2.phylogeny.qza test-data/unweighted_unifrac.test3.feature-table.qza test-data/unweighted_unifrac.test3.phylogeny.qza test-data/weighted_unifrac.test0.feature-table.qza test-data/weighted_unifrac.test0.phylogeny.qza test-data/weighted_unifrac.test1.feature-table.qza test-data/weighted_unifrac.test1.phylogeny.qza test-data/weighted_unifrac.test2.feature-table.qza test-data/weighted_unifrac.test2.phylogeny.qza test-data/weighted_unifrac.test3.feature-table.qza test-data/weighted_unifrac.test3.phylogeny.qza
diffstat 61 files changed, 7 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__diversity_lib__beta_passthrough.xml	Sat Nov 01 17:17:10 2025 +0000
+++ b/qiime2__diversity_lib__beta_passthrough.xml	Wed Jan 28 16:21:41 2026 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2025, QIIME 2 development team.
+Copyright (c) 2026, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.10.0)
+    q2galaxy (version: 2026.1.0)
 for:
-    qiime2 (version: 2025.10.0)
+    qiime2 (version: 2026.1.0)
 -->
-<tool name="qiime2 diversity-lib beta-passthrough" id="qiime2__diversity_lib__beta_passthrough" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity-lib beta-passthrough" id="qiime2__diversity_lib__beta_passthrough" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
     <description>Beta Passthrough (non-phylogenetic)</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
     </requirements>
     <version_command>q2galaxy version diversity_lib</version_command>
     <command detect_errors="exit_code">q2galaxy run diversity_lib beta_passthrough '$inputs'</command>
@@ -85,17 +85,6 @@
             </output>
         </test>
         <test>
-            <param name="table" value="beta_passthrough.test2.feature-table.qza" ftype="qza"/>
-            <param name="metric" value="aitchison"/>
-            <output name="distance_matrix" ftype="qza">
-                <assert_contents>
-                    <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
-                        <has_line_matching expression="type: DistanceMatrix"/>
-                    </has_archive_member>
-                </assert_contents>
-            </output>
-        </test>
-        <test>
             <param name="table" value="beta_passthrough.test3.feature-table.qza" ftype="qza"/>
             <param name="metric" value="aitchison"/>
             <param name="pseudocount" value="5"/>
@@ -118,7 +107,7 @@
 --------
 :distance_matrix.qza: The resulting distance matrix.
 
-|  
+|
 
 Description:
 ------------
@@ -209,7 +198,7 @@
       - ``aitchison-dm.qza``
 
 
-|  
+|
 
 </help>
     <citations>
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