Mercurial > repos > q2d2 > qiime2__diversity_lib__faith_pd
comparison qiime2__diversity_lib__faith_pd.xml @ 3:c2eccef98006 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author | q2d2 |
---|---|
date | Thu, 25 Apr 2024 21:04:29 +0000 |
parents | 1142e83c6ae3 |
children | c5a92b4cb5db |
comparison
equal
deleted
inserted
replaced
2:1142e83c6ae3 | 3:c2eccef98006 |
---|---|
1 <?xml version='1.0' encoding='utf-8'?> | 1 <?xml version='1.0' encoding='utf-8'?> |
2 <!-- | 2 <!-- |
3 Copyright (c) 2023, QIIME 2 development team. | 3 Copyright (c) 2024, QIIME 2 development team. |
4 | 4 |
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
6 --> | 6 --> |
7 <!-- | 7 <!-- |
8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
9 q2galaxy (version: 2023.5.0) | 9 q2galaxy (version: 2024.2.1) |
10 for: | 10 for: |
11 qiime2 (version: 2023.5.1) | 11 qiime2 (version: 2024.2.0) |
12 --> | 12 --> |
13 <tool name="qiime2 diversity-lib faith-pd" id="qiime2__diversity_lib__faith_pd" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 diversity-lib faith-pd" id="qiime2__diversity_lib__faith_pd" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> |
14 <description>Faith's Phylogenetic Diversity</description> | 14 <description>Faith's Phylogenetic Diversity</description> |
15 <requirements> | 15 <requirements> |
16 <container type="docker">quay.io/qiime2/core:2023.5</container> | 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> |
17 </requirements> | 17 </requirements> |
18 <version_command>q2galaxy version diversity_lib</version_command> | 18 <version_command>q2galaxy version diversity_lib</version_command> |
19 <command detect_errors="exit_code">q2galaxy run diversity_lib faith_pd '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run diversity_lib faith_pd '$inputs'</command> |
20 <configfiles> | 20 <configfiles> |
21 <inputs name="inputs" data_style="paths"/> | 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
22 </configfiles> | 22 </configfiles> |
23 <inputs> | 23 <inputs> |
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which Faith's phylogenetic diversity should be computed. Table values will be converted to presence/absence."> | 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which Faith's phylogenetic diversity should be computed. Table values will be converted to presence/absence."> |
25 <options options_filter_attribute="metadata.semantic_type"> | 25 <options options_filter_attribute="metadata.semantic_type"> |
26 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> | 26 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> |
33 <options options_filter_attribute="metadata.semantic_type"> | 33 <options options_filter_attribute="metadata.semantic_type"> |
34 <filter type="add_value" value="Phylogeny[Rooted]"/> | 34 <filter type="add_value" value="Phylogeny[Rooted]"/> |
35 </options> | 35 </options> |
36 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]']</validator> | 36 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]']</validator> |
37 </param> | 37 </param> |
38 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | |
39 <conditional name="__q2galaxy__GUI__conditional__threads__"> | |
40 <param name="__q2galaxy__GUI__select__" type="select" label="threads: Int % Range(1, None) | Str % Choices('auto')" help="[default: 1] The number of CPU threads to use in performing this calculation. May not exceed the number of available physical cores. If threads = 'auto', one thread will be created for each identified CPU core on the host."> | |
41 <option value="auto">auto (Str)</option> | |
42 <option value="__q2galaxy__::control::Int X Range(1__comma__ None)" selected="true">Provide a value (Int % Range(1, None))</option> | |
43 </param> | |
44 <when value="auto"> | |
45 <param name="threads" type="hidden" value="auto"/> | |
46 </when> | |
47 <when value="__q2galaxy__::control::Int X Range(1__comma__ None)"> | |
48 <param name="threads" type="integer" min="1" value="1" label="threads: Int % Range(1, None)" help="[default: 1] The number of CPU threads to use in performing this calculation. May not exceed the number of available physical cores. If threads = 'auto', one thread will be created for each identified CPU core on the host."/> | |
49 </when> | |
50 </conditional> | |
51 </section> | |
52 </inputs> | 38 </inputs> |
53 <outputs> | 39 <outputs> |
54 <data name="vector" format="qza" label="${tool.name} on ${on_string}: vector.qza" from_work_dir="vector.qza"/> | 40 <data name="vector" format="qza" label="${tool.name} on ${on_string}: vector.qza" from_work_dir="vector.qza"/> |
55 </outputs> | 41 </outputs> |
56 <tests> | 42 <tests> |