--- a/qiime2__diversity_lib__faith_pd.xml Thu Jun 08 19:42:09 2023 +0000
+++ b/qiime2__diversity_lib__faith_pd.xml Thu Apr 25 21:04:29 2024 +0000
@@ -1,24 +1,24 @@
<?xml version='1.0' encoding='utf-8'?>
<!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
- q2galaxy (version: 2023.5.0)
+ q2galaxy (version: 2024.2.1)
for:
- qiime2 (version: 2023.5.1)
+ qiime2 (version: 2024.2.0)
-->
-<tool name="qiime2 diversity-lib faith-pd" id="qiime2__diversity_lib__faith_pd" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity-lib faith-pd" id="qiime2__diversity_lib__faith_pd" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
<description>Faith's Phylogenetic Diversity</description>
<requirements>
- <container type="docker">quay.io/qiime2/core:2023.5</container>
+ <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
</requirements>
<version_command>q2galaxy version diversity_lib</version_command>
<command detect_errors="exit_code">q2galaxy run diversity_lib faith_pd '$inputs'</command>
<configfiles>
- <inputs name="inputs" data_style="paths"/>
+ <inputs name="inputs" data_style="staging_path_and_source_path"/>
</configfiles>
<inputs>
<param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which Faith's phylogenetic diversity should be computed. Table values will be converted to presence/absence.">
@@ -35,20 +35,6 @@
</options>
<validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]']</validator>
</param>
- <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
- <conditional name="__q2galaxy__GUI__conditional__threads__">
- <param name="__q2galaxy__GUI__select__" type="select" label="threads: Int % Range(1, None) | Str % Choices('auto')" help="[default: 1] The number of CPU threads to use in performing this calculation. May not exceed the number of available physical cores. If threads = 'auto', one thread will be created for each identified CPU core on the host.">
- <option value="auto">auto (Str)</option>
- <option value="__q2galaxy__::control::Int X Range(1__comma__ None)" selected="true">Provide a value (Int % Range(1, None))</option>
- </param>
- <when value="auto">
- <param name="threads" type="hidden" value="auto"/>
- </when>
- <when value="__q2galaxy__::control::Int X Range(1__comma__ None)">
- <param name="threads" type="integer" min="1" value="1" label="threads: Int % Range(1, None)" help="[default: 1] The number of CPU threads to use in performing this calculation. May not exceed the number of available physical cores. If threads = 'auto', one thread will be created for each identified CPU core on the host."/>
- </when>
- </conditional>
- </section>
</inputs>
<outputs>
<data name="vector" format="qza" label="${tool.name} on ${on_string}: vector.qza" from_work_dir="vector.qza"/>
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