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+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+ q2galaxy (version: 2022.8.1)
+for:
+ qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 diversity-lib observed-features" id="qiime2__diversity_lib__observed_features" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+ <description>Observed Features</description>
+ <requirements>
+ <container type="docker">quay.io/qiime2/core:2022.8</container>
+ </requirements>
+ <version_command>q2galaxy version diversity_lib</version_command>
+ <command detect_errors="aggressive">q2galaxy run diversity_lib observed_features '$inputs'</command>
+ <configfiles>
+ <inputs name="inputs" data_style="paths"/>
+ </configfiles>
+ <inputs>
+ <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence.">
+ <options options_filter_attribute="metadata.semantic_type">
+ <filter type="add_value" value="FeatureTable[Frequency]"/>
+ <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
+ <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
+ </options>
+ <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
+ </param>
+ </inputs>
+ <outputs>
+ <data name="vector" format="qza" label="${tool.name} on ${on_string}: vector.qza" from_work_dir="vector.qza"/>
+ </outputs>
+ <tests>
+ <test>
+ <param name="table" value="observed_features.test0.feature-table.qza" ftype="qza"/>
+ <output name="vector" ftype="qza">
+ <assert_contents>
+ <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
+ <has_line_matching expression="type: SampleData\[AlphaDiversity\]"/>
+ </has_archive_member>
+ <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/data\/alpha-diversity.tsv">
+ <has_line_matching expression="S1	1"/>
+ <has_line_matching expression="S2	1"/>
+ <has_line_matching expression="S3	2"/>
+ <has_line_matching expression="S4	2"/>
+ <has_line_matching expression="S5	3"/>
+ </has_archive_member>
+ </assert_contents>
+ </output>
+ </test>
+ </tests>
+ <help>
+QIIME 2: diversity-lib observed-features
+========================================
+Observed Features
+
+
+Outputs:
+--------
+:vector.qza: Vector containing per-sample counts of observed features.
+
+|
+
+Description:
+------------
+Compute the number of observed features for each sample in a feature table
+
+Examples:
+---------
+
+basic
+*****
+Using the ``qiime2 diversity-lib observed-features`` tool:
+ #. Set *"table"* to ``#: feature-table.qza``
+ #. Press the ``Execute`` button.
+
+Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
+ (Renaming is optional, but it will make any subsequent steps easier to complete.)
+
+ .. list-table::
+ :align: left
+ :header-rows: 1
+
+ * - History Name
+ - *"Name"* to set (be sure to press ``Save``)
+ * - ``#: qiime2 diversity-lib observed-features [...] : vector.qza``
+ - ``obs-feat-vector.qza``
+
+
+|
+
+</help>
+ <citations>
+ <citation type="doi">10.1038/s41587-019-0209-9</citation>
+ </citations>
+</tool>
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