Mercurial > repos > q2d2 > qiime2__feature_classifier__makeblastdb
changeset 0:0a6ad1c7d5bb draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author | q2d2 |
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date | Thu, 25 Apr 2024 21:06:01 +0000 |
parents | |
children | 2a24d33467d8 |
files | qiime2__feature_classifier__makeblastdb.xml test-data/.gitkeep |
diffstat | 1 files changed, 60 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__feature_classifier__makeblastdb.xml Thu Apr 25 21:06:01 2024 +0000 @@ -0,0 +1,60 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2024, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2024.2.1) +for: + qiime2 (version: 2024.2.0) +--> +<tool name="qiime2 feature-classifier makeblastdb" id="qiime2__feature_classifier__makeblastdb" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> + <description>Make BLAST database.</description> + <requirements> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> + </requirements> + <version_command>q2galaxy version feature_classifier</version_command> + <command detect_errors="exit_code">q2galaxy run feature_classifier makeblastdb '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="staging_path_and_source_path"/> + </configfiles> + <inputs> + <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required] Input reference sequences."> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureData[Sequence]"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator> + </param> + </inputs> + <outputs> + <data name="database" format="qza" label="${tool.name} on ${on_string}: database.qza" from_work_dir="database.qza"/> + </outputs> + <tests/> + <help> +QIIME 2: feature-classifier makeblastdb +======================================= +Make BLAST database. + + +Outputs: +-------- +:database.qza: Output BLAST database. + +| + +Description: +------------ +Make BLAST database from custom sequence collection. + + +| + +</help> + <citations> + <citation type="doi">10.1186/1471-2105-10-421</citation> + <citation type="doi">10.1186/s40168-018-0470-z</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool>