Mercurial > repos > q2d2 > qiime2__feature_table__rename_ids
comparison qiime2__feature_table__rename_ids.xml @ 4:f73f0cda6560 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit c7e80dcda727ce63b42aa8a946e9330310929797
| author | q2d2 |
|---|---|
| date | Mon, 03 Jun 2024 23:27:13 +0000 |
| parents | b8225d65b620 |
| children |
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| 3:b8225d65b620 | 4:f73f0cda6560 |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2024.2.1) | 9 q2galaxy (version: 2024.5.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2024.2.0) | 11 qiime2 (version: 2024.5.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 feature-table rename-ids" id="qiime2__feature_table__rename_ids" version="2024.2.2+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 feature-table rename-ids" id="qiime2__feature_table__rename_ids" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Renames sample or feature ids in a table</description> | 14 <description>Renames sample or feature ids in a table</description> |
| 15 <requirements> | 15 <requirements> |
| 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> | 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> |
| 17 </requirements> | 17 </requirements> |
| 18 <version_command>q2galaxy version feature_table</version_command> | 18 <version_command>q2galaxy version feature_table</version_command> |
| 19 <command detect_errors="exit_code">q2galaxy run feature_table rename_ids '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run feature_table rename_ids '$inputs'</command> |
| 20 <configfiles> | 20 <configfiles> |
| 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> | 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 22 </configfiles> | 22 </configfiles> |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Composition⁴]" help="[required] The table to be renamed"> | 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Composition⁴]" help="[required] The table to be renamed"> |
| 25 <options options_filter_attribute="metadata.semantic_type"> | 25 <options options_filter_attribute="metadata.semantic_type"> |
| 26 <filter type="add_value" value="FeatureTable[Composition]"/> | 26 <filter type="add_value" value="FeatureTable[Composition]"/> |
| 27 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> | |
| 28 <filter type="add_value" value="FeatureTable[Frequency]"/> | 27 <filter type="add_value" value="FeatureTable[Frequency]"/> |
| 29 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> | 28 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> |
| 29 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> | |
| 30 </options> | 30 </options> |
| 31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> | 31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> |
| 32 </param> | 32 </param> |
| 33 <conditional name="metadata"> | 33 <conditional name="metadata"> |
| 34 <param name="type" type="select" label="metadata: MetadataColumn[Categorical]" help="[required] A metadata column defining the new ids. Each original id must map to a new unique id. If strict mode is used, then every id in the original table must have a new id."> | 34 <param name="type" type="select" label="metadata: MetadataColumn[Categorical]" help="[required] A metadata column defining the new ids. Each original id must map to a new unique id. If strict mode is used, then every id in the original table must have a new id."> |