changeset 5:04701ff08047 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
author q2d2
date Sat, 01 Nov 2025 17:19:32 +0000 (69 minutes ago)
parents 74e7761a3fa2
children
files qiime2__feature_table__subsample_ids.xml test-data/filter_features.test0.feature-table.qza test-data/filter_features.test1.feature-table.qza test-data/filter_features.test1.sequences.qza test-data/filter_features_conditionally.test0.feature-table.qza test-data/filter_samples.test0.feature-table.qza test-data/filter_samples.test1.feature-table.qza test-data/filter_samples.test2.feature-table.qza test-data/filter_samples.test3.feature-table.qza test-data/filter_samples.test4.feature-table.qza test-data/filter_samples.test5.feature-table.qza test-data/filter_samples.test6.feature-table.qza test-data/group.test0.feature-table.qza test-data/merge.test0.feature-table1.qza test-data/merge.test0.feature-table2.qza test-data/merge.test1.feature-table1.qza test-data/merge.test1.feature-table2.qza test-data/merge.test1.feature-table3.qza test-data/merge_seqs.test0.seqs1.qza test-data/merge_seqs.test0.seqs2.qza test-data/merge_taxa.test0.tax1.qza test-data/merge_taxa.test0.tax2.qza test-data/summarize.test0.feature-table.qza test-data/summarize_plus.test0.feature-table.qza test-data/tabulate_feature_frequencies.test0.feature-table.qza test-data/tabulate_sample_frequencies.test0.feature-table.qza test-data/tabulate_seqs.test0.rep-seqs.qza test-data/tabulate_seqs.test1.rep-seqs-single-taxon.qza test-data/tabulate_seqs.test1.single-taxonomy.qza test-data/tabulate_seqs.test2.multi-taxonomy/GG1.qza test-data/tabulate_seqs.test2.multi-taxonomy/GG2.qza test-data/tabulate_seqs.test2.rep-seqs-multi-taxon.qza
diffstat 32 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__feature_table__subsample_ids.xml	Tue Jul 15 21:57:45 2025 +0000
+++ b/qiime2__feature_table__subsample_ids.xml	Sat Nov 01 17:19:32 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.7.0)
+    q2galaxy (version: 2025.10.0)
 for:
-    qiime2 (version: 2025.7.0)
+    qiime2 (version: 2025.10.0)
 -->
-<tool name="qiime2 feature-table subsample-ids" id="qiime2__feature_table__subsample_ids" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 feature-table subsample-ids" id="qiime2__feature_table__subsample_ids" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Subsample table</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
     </requirements>
     <version_command>q2galaxy version feature_table</version_command>
     <command detect_errors="exit_code">q2galaxy run feature_table subsample_ids '$inputs'</command>
@@ -37,6 +37,9 @@
             <option value="feature">feature</option>
             <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
         </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <param name="random_seed" type="integer" min="0" optional="true" label="random_seed: Int % Range(0, None)" help="[optional]  Set the seed for the subsampling. Using the same seed with the same table will always lead to the same result. Defaults to a random seed."/>
+        </section>
     </inputs>
     <outputs>
         <data name="sampled_table" format="qza" label="${tool.name} on ${on_string}: sampled_table.qza" from_work_dir="sampled_table.qza"/>
Binary file test-data/filter_features.test0.feature-table.qza has changed
Binary file test-data/filter_features.test1.feature-table.qza has changed
Binary file test-data/filter_features.test1.sequences.qza has changed
Binary file test-data/filter_features_conditionally.test0.feature-table.qza has changed
Binary file test-data/filter_samples.test0.feature-table.qza has changed
Binary file test-data/filter_samples.test1.feature-table.qza has changed
Binary file test-data/filter_samples.test2.feature-table.qza has changed
Binary file test-data/filter_samples.test3.feature-table.qza has changed
Binary file test-data/filter_samples.test4.feature-table.qza has changed
Binary file test-data/filter_samples.test5.feature-table.qza has changed
Binary file test-data/filter_samples.test6.feature-table.qza has changed
Binary file test-data/group.test0.feature-table.qza has changed
Binary file test-data/merge.test0.feature-table1.qza has changed
Binary file test-data/merge.test0.feature-table2.qza has changed
Binary file test-data/merge.test1.feature-table1.qza has changed
Binary file test-data/merge.test1.feature-table2.qza has changed
Binary file test-data/merge.test1.feature-table3.qza has changed
Binary file test-data/merge_seqs.test0.seqs1.qza has changed
Binary file test-data/merge_seqs.test0.seqs2.qza has changed
Binary file test-data/merge_taxa.test0.tax1.qza has changed
Binary file test-data/merge_taxa.test0.tax2.qza has changed
Binary file test-data/summarize.test0.feature-table.qza has changed
Binary file test-data/summarize_plus.test0.feature-table.qza has changed
Binary file test-data/tabulate_feature_frequencies.test0.feature-table.qza has changed
Binary file test-data/tabulate_sample_frequencies.test0.feature-table.qza has changed
Binary file test-data/tabulate_seqs.test0.rep-seqs.qza has changed
Binary file test-data/tabulate_seqs.test1.rep-seqs-single-taxon.qza has changed
Binary file test-data/tabulate_seqs.test1.single-taxonomy.qza has changed
Binary file test-data/tabulate_seqs.test2.multi-taxonomy/GG1.qza has changed
Binary file test-data/tabulate_seqs.test2.multi-taxonomy/GG2.qza has changed
Binary file test-data/tabulate_seqs.test2.rep-seqs-multi-taxon.qza has changed