Mercurial > repos > q2d2 > qiime2__feature_table__summarize
comparison qiime2__feature_table__summarize.xml @ 0:bfe9f18ac641 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author | q2d2 |
---|---|
date | Mon, 29 Aug 2022 20:00:26 +0000 |
parents | |
children | c7553080ec2e |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:bfe9f18ac641 |
---|---|
1 <?xml version='1.0' encoding='utf-8'?> | |
2 <!-- | |
3 Copyright (c) 2022, QIIME 2 development team. | |
4 | |
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | |
6 --> | |
7 <!-- | |
8 This tool was automatically generated by: | |
9 q2galaxy (version: 2022.8.1) | |
10 for: | |
11 qiime2 (version: 2022.8.1) | |
12 --> | |
13 <tool name="qiime2 feature-table summarize" id="qiime2__feature_table__summarize" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> | |
14 <description>Summarize table</description> | |
15 <requirements> | |
16 <container type="docker">quay.io/qiime2/core:2022.8</container> | |
17 </requirements> | |
18 <version_command>q2galaxy version feature_table</version_command> | |
19 <command detect_errors="aggressive">q2galaxy run feature_table summarize '$inputs'</command> | |
20 <configfiles> | |
21 <inputs name="inputs" data_style="paths"/> | |
22 </configfiles> | |
23 <inputs> | |
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table to be summarized."> | |
25 <options options_filter_attribute="metadata.semantic_type"> | |
26 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> | |
27 <filter type="add_value" value="FeatureTable[Frequency]"/> | |
28 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> | |
29 </options> | |
30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> | |
31 </param> | |
32 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | |
33 <repeat name="sample_metadata" help="[optional] The sample metadata." title="sample_metadata: Metadata"> | |
34 <conditional name="__q2galaxy__GUI__conditional__sample_metadata__"> | |
35 <param name="type" type="select" label="sample_metadata: Metadata"> | |
36 <option value="tsv" selected="true">Metadata from TSV</option> | |
37 <option value="qza">Metadata from Artifact</option> | |
38 </param> | |
39 <when value="tsv"> | |
40 <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/> | |
41 </when> | |
42 <when value="qza"> | |
43 <param name="source" type="data" format="qza" label="Metadata Source"/> | |
44 </when> | |
45 </conditional> | |
46 </repeat> | |
47 </section> | |
48 </inputs> | |
49 <outputs> | |
50 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> | |
51 </outputs> | |
52 <tests/> | |
53 <help> | |
54 QIIME 2: feature-table summarize | |
55 ================================ | |
56 Summarize table | |
57 | |
58 | |
59 Outputs: | |
60 -------- | |
61 :visualization.qzv: <no description> | |
62 | |
63 | | |
64 | |
65 Description: | |
66 ------------ | |
67 Generate visual and tabular summaries of a feature table. | |
68 | |
69 | |
70 | | |
71 | |
72 </help> | |
73 <citations> | |
74 <citation type="doi">10.1038/s41587-019-0209-9</citation> | |
75 </citations> | |
76 </tool> |