Mercurial > repos > q2d2 > qiime2__feature_table__summarize
comparison qiime2__feature_table__summarize.xml @ 3:ef53e9dd3752 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:13:40 +0000 |
| parents | 365ce7a8e641 |
| children | 517cc51856dd |
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| 2:365ce7a8e641 | 3:ef53e9dd3752 |
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| 1 <?xml version='1.0' encoding='utf-8'?> | 1 <?xml version='1.0' encoding='utf-8'?> |
| 2 <!-- | 2 <!-- |
| 3 Copyright (c) 2023, QIIME 2 development team. | 3 Copyright (c) 2024, QIIME 2 development team. |
| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2023.5.0) | 9 q2galaxy (version: 2024.2.1) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2023.5.1) | 11 qiime2 (version: 2024.2.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 feature-table summarize" id="qiime2__feature_table__summarize" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 feature-table summarize" id="qiime2__feature_table__summarize" version="2024.2.2+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Summarize table</description> | 14 <description>Summarize table</description> |
| 15 <requirements> | 15 <requirements> |
| 16 <container type="docker">quay.io/qiime2/core:2023.5</container> | 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> |
| 17 </requirements> | 17 </requirements> |
| 18 <version_command>q2galaxy version feature_table</version_command> | 18 <version_command>q2galaxy version feature_table</version_command> |
| 19 <command detect_errors="exit_code">q2galaxy run feature_table summarize '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run feature_table summarize '$inputs'</command> |
| 20 <configfiles> | 20 <configfiles> |
| 21 <inputs name="inputs" data_style="paths"/> | 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 22 </configfiles> | 22 </configfiles> |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table to be summarized."> | 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | PresenceAbsence]" help="[required] The feature table to be summarized."> |
| 25 <options options_filter_attribute="metadata.semantic_type"> | 25 <options options_filter_attribute="metadata.semantic_type"> |
| 26 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> | |
| 26 <filter type="add_value" value="FeatureTable[Frequency]"/> | 27 <filter type="add_value" value="FeatureTable[Frequency]"/> |
| 27 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> | |
| 28 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> | |
| 29 </options> | 28 </options> |
| 30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> | 29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]']</validator> |
| 31 </param> | 30 </param> |
| 32 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | 31 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> |
| 33 <repeat name="sample_metadata" help="[optional] The sample metadata." title="sample_metadata: Metadata"> | 32 <repeat name="sample_metadata" help="[optional] The sample metadata." title="sample_metadata: Metadata"> |
| 34 <conditional name="__q2galaxy__GUI__conditional__sample_metadata__"> | 33 <conditional name="__q2galaxy__GUI__conditional__sample_metadata__"> |
| 35 <param name="type" type="select" label="sample_metadata: Metadata"> | 34 <param name="type" type="select" label="sample_metadata: Metadata"> |