comparison qiime2__feature_table__tabulate_seqs.xml @ 0:61ef9506af71 draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1

0:61ef9506af71

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2022, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2022.8.1)
for:
    qiime2 (version: 2022.8.1)
-->
<tool name="qiime2 feature-table tabulate-seqs" id="qiime2__feature_table__tabulate_seqs" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
    <description>View sequence associated with each feature</description>
    <requirements>
        <container type="docker">quay.io/qiime2/core:2022.8</container>
    </requirements>
    <version_command>q2galaxy version feature_table</version_command>
    <command detect_errors="aggressive">q2galaxy run feature_table tabulate_seqs '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="paths"/>
    </configfiles>
    <inputs>
        <param name="data" type="data" format="qza" label="data: FeatureData[Sequence | AlignedSequence]" help="[required]  The feature sequences to be tabulated.">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="FeatureData[Sequence]"/>
                <filter type="add_value" value="FeatureData[AlignedSequence]"/>
            </options>
            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator>
        </param>
    </inputs>
    <outputs>
        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
    </outputs>
    <tests/>
    <help>
QIIME 2: feature-table tabulate-seqs
====================================
View sequence associated with each feature


Outputs:
--------
:visualization.qzv: &lt;no description&gt;

|  

Description:
------------
Generate tabular view of feature identifier to sequence mapping, including links to BLAST each sequence against the NCBI nt database.


|  

</help>
    <citations>
        <citation type="doi">10.1093/nar/gkw1071</citation>
        <citation type="doi">10.1093/nar/gkn201</citation>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>