# HG changeset patch
# User q2d2
# Date 1714079693 0
# Node ID f900d65ea21797eb8e73bb9924e88d4278290155
# Parent  2fa85eae206ef498484b47ae4465217c8ef5c419
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

diff -r 2fa85eae206e -r f900d65ea217 qiime2__fragment_insertion__sepp.xml
--- a/qiime2__fragment_insertion__sepp.xml	Thu Jun 08 19:48:07 2023 +0000
+++ b/qiime2__fragment_insertion__sepp.xml	Thu Apr 25 21:14:53 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 fragment-insertion sepp" id="qiime2__fragment_insertion__sepp" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 fragment-insertion sepp" id="qiime2__fragment_insertion__sepp" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Insert fragment sequences using SEPP into reference phylogenies.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version fragment_insertion</version_command>
     <command detect_errors="exit_code">q2galaxy run fragment_insertion sepp '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="representative_sequences" type="data" format="qza" label="representative_sequences: FeatureData[Sequence]" help="[required]  The sequences to insert into the reference tree.">
@@ -36,7 +36,6 @@
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
             <param name="alignment_subset_size" type="integer" value="1000" label="alignment_subset_size: Int" help="[default: 1000]  Each placement subset is further broken into subsets of at most these many sequences and a separate HMM is trained on each subset."/>
             <param name="placement_subset_size" type="integer" value="5000" label="placement_subset_size: Int" help="[default: 5000]  The tree is divided into subsets such that each subset includes at most these many subsets. The placement step places the fragment on only one subset, determined based on alignment scores. Further reading: https://github.com/smirarab/sepp/blob/master/tutorial/sepp-tutorial.md#sample-datasets-default-parameters."/>
-            <param name="threads" type="integer" value="1" label="threads: Int" help="[default: 1]  The number of threads to use."/>
             <param name="debug" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="debug: Bool" help="[default: No]  Collect additional run information to STDOUT for debugging. Temporary directories will not be removed if run fails."/>
         </section>
     </inputs>