Mercurial > repos > q2d2 > qiime2__gneiss__ilr_phylogenetic_ordination
comparison qiime2__gneiss__ilr_phylogenetic_ordination.xml @ 2:f55de040b84c draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__gneiss commit 65e4952f33eb335528e8553150e9097e5ea8f556
| author | q2d2 |
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| date | Thu, 08 Jun 2023 19:48:37 +0000 |
| parents | f9e75fc8334b |
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| 1:f9e75fc8334b | 2:f55de040b84c |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2022.11.1) | 9 q2galaxy (version: 2023.5.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2022.11.1) | 11 qiime2 (version: 2023.5.1) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 gneiss ilr-phylogenetic-ordination" id="qiime2__gneiss__ilr_phylogenetic_ordination" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 gneiss ilr-phylogenetic-ordination" id="qiime2__gneiss__ilr_phylogenetic_ordination" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Ordination through a phylogenetic Isometric Log Ratio transform.</description> | 14 <description>Ordination through a phylogenetic Isometric Log Ratio transform.</description> |
| 15 <requirements> | 15 <requirements> |
| 16 <container type="docker">quay.io/qiime2/core:2022.11</container> | 16 <container type="docker">quay.io/qiime2/core:2023.5</container> |
| 17 </requirements> | 17 </requirements> |
| 18 <version_command>q2galaxy version gneiss</version_command> | 18 <version_command>q2galaxy version gneiss</version_command> |
| 19 <command detect_errors="exit_code">q2galaxy run gneiss ilr_phylogenetic_ordination '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run gneiss ilr_phylogenetic_ordination '$inputs'</command> |
| 20 <configfiles> | 20 <configfiles> |
| 21 <inputs name="inputs" data_style="paths"/> | 21 <inputs name="inputs" data_style="paths"/> |
| 22 </configfiles> | 22 </configfiles> |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | Composition]" help="[required] The feature table containing the samples in which the ilr transform will be performed."> | 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | Composition]" help="[required] The feature table containing the samples in which the ilr transform will be performed."> |
| 25 <options options_filter_attribute="metadata.semantic_type"> | 25 <options options_filter_attribute="metadata.semantic_type"> |
| 26 <filter type="add_value" value="FeatureTable[Composition]"/> | |
| 26 <filter type="add_value" value="FeatureTable[Frequency]"/> | 27 <filter type="add_value" value="FeatureTable[Frequency]"/> |
| 27 <filter type="add_value" value="FeatureTable[Composition]"/> | |
| 28 </options> | 28 </options> |
| 29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]']</validator> | 29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]']</validator> |
| 30 </param> | 30 </param> |
| 31 <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted]" help="[required] A rooted phylogeny of feature identifiers that defines the partitions of features. Each tip in the hierarchycorresponds to the feature identifiers in the table. This tree can contain tip ids that are not present in the table, but all feature ids in the table must be present in this tree. This assumes that all of the internal nodes in the tree have labels. This tree may contain polytomic nodes (i.e., nodes with more than two children), in which case they will be bifurcated."> | 31 <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted]" help="[required] A rooted phylogeny of feature identifiers that defines the partitions of features. Each tip in the hierarchycorresponds to the feature identifiers in the table. This tree can contain tip ids that are not present in the table, but all feature ids in the table must be present in this tree. This assumes that all of the internal nodes in the tree have labels. This tree may contain polytomic nodes (i.e., nodes with more than two children), in which case they will be bifurcated."> |
| 32 <options options_filter_attribute="metadata.semantic_type"> | 32 <options options_filter_attribute="metadata.semantic_type"> |