Mercurial > repos > q2d2 > qiime2__metadata__distance_matrix
view qiime2__metadata__distance_matrix.xml @ 3:873c9175076f draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author | q2d2 |
---|---|
date | Thu, 25 Apr 2024 21:16:10 +0000 |
parents | 8a43985a8f35 |
children | 3ff91b9bf4bb |
line wrap: on
line source
<?xml version='1.0' encoding='utf-8'?> <!-- Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: q2galaxy (version: 2024.2.1) for: qiime2 (version: 2024.2.0) --> <tool name="qiime2 metadata distance-matrix" id="qiime2__metadata__distance_matrix" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>Create a distance matrix from a numeric Metadata column</description> <requirements> <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version metadata</version_command> <command detect_errors="exit_code">q2galaxy run metadata distance_matrix '$inputs'</command> <configfiles> <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <conditional name="metadata"> <param name="type" type="select" label="metadata: MetadataColumn[Numeric]" help="[required] Numeric metadata column to compute pairwise Euclidean distances from"> <option value="tsv" selected="true">Metadata from TSV</option> <option value="qza">Metadata from Artifact</option> </param> <when value="tsv"> <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/> <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true"> <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator> </param> </when> <when value="qza"> <param name="source" type="data" format="qza" label="Metadata Source"/> <param name="column" type="text" label="Column Name"> <validator type="empty_field"/> </param> </when> </conditional> </inputs> <outputs> <data name="distance_matrix" format="qza" label="${tool.name} on ${on_string}: distance_matrix.qza" from_work_dir="distance_matrix.qza"/> </outputs> <tests/> <help> QIIME 2: metadata distance-matrix ================================= Create a distance matrix from a numeric Metadata column Outputs: -------- :distance_matrix.qza: <no description> | Description: ------------ Create a distance matrix from a numeric metadata column. The Euclidean distance is computed between each pair of samples or features in the column. Tip: the distance matrix produced by this method can be used as input to the Mantel test available in `q2-diversity`. | </help> <citations> <citation type="doi">10.1038/s41587-019-0209-9</citation> </citations> </tool>