Mercurial > repos > q2d2 > qiime2__metadata__tabulate
diff qiime2__metadata__tabulate.xml @ 2:d6e1b976c373 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata commit 65e4952f33eb335528e8553150e9097e5ea8f556
author | q2d2 |
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date | Thu, 08 Jun 2023 19:49:32 +0000 |
parents | f6763a86190b |
children | b833fbd936a7 |
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--- a/qiime2__metadata__tabulate.xml Fri Jan 13 22:58:11 2023 +0000 +++ b/qiime2__metadata__tabulate.xml Thu Jun 08 19:49:32 2023 +0000 @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.11.1) + q2galaxy (version: 2023.5.0) for: - qiime2 (version: 2022.11.1) + qiime2 (version: 2023.5.1) --> -<tool name="qiime2 metadata tabulate" id="qiime2__metadata__tabulate" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 metadata tabulate" id="qiime2__metadata__tabulate" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> <description>Interactively explore Metadata in an HTML table</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.11</container> + <container type="docker">quay.io/qiime2/core:2023.5</container> </requirements> <version_command>q2galaxy version metadata</version_command> <command detect_errors="exit_code">q2galaxy run metadata tabulate '$inputs'</command> @@ -42,45 +42,7 @@ <outputs> <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> </outputs> - <tests> - <test> - <repeat name="input"> - <conditional name="__q2galaxy__GUI__conditional__input__"> - <param name="type" value="qza"/> - <param name="source" value="tabulate.test0.demux-stats.qza" ftype="qza"/> - </conditional> - </repeat> - <output name="visualization" ftype="qzv"> - <assert_contents> - <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml"> - <has_line_matching expression="type: Visualization"/> - </has_archive_member> - </assert_contents> - </output> - </test> - <test> - <repeat name="input"> - <conditional name="__q2galaxy__GUI__conditional__input__"> - <param name="type" value="tsv"/> - <param name="source" value="tabulate.test1.sample-metadata.tsv" ftype="qiime2.tabular"/> - </conditional> - </repeat> - <repeat name="input"> - <conditional name="__q2galaxy__GUI__conditional__input__"> - <param name="type" value="qza"/> - <param name="source" value="tabulate.test1.faith-pd-vector.qza" ftype="qza"/> - </conditional> - </repeat> - <param name="page_size" value="25"/> - <output name="visualization" ftype="qzv"> - <assert_contents> - <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml"> - <has_line_matching expression="type: Visualization"/> - </has_archive_member> - </assert_contents> - </output> - </test> - </tests> + <tests/> <help> QIIME 2: metadata tabulate ========================== @@ -97,69 +59,6 @@ ------------ Generate a tabular view of Metadata. The output visualization supports interactive filtering, sorting, and exporting to common file formats. -Examples: ---------- - -basic_tabulate_usage -******************** -Using the ``qiime2 metadata tabulate`` tool: - #. For *"input"*: - - - Perform the following steps. - - #. Change to ``Metadata from Artifact`` - #. Set *"Metadata Source"* to ``demux-stats.qza`` - - - #. Press the ``Execute`` button. - -Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows: - (Renaming is optional, but it will make any subsequent steps easier to complete.) - - .. list-table:: - :align: left - :header-rows: 1 - - * - History Name - - *"Name"* to set (be sure to press ``Save``) - * - ``#: qiime2 metadata tabulate [...] : visualization.qzv`` - - ``demux-stats-viz.qzv`` - -tabulate_multiple_files -*********************** -| Multiple metadata files or artifacts viewed as metadata can be merged to make one tabular visualization. This one displays only 25 metadata rows per page. -Using the ``qiime2 metadata tabulate`` tool: - #. For *"input"*: - - #. Perform the following steps. - - #. Leave as ``Metadata from TSV`` - #. Set *"Metadata Source"* to ``sample-metadata.tsv`` - - #. Press the ``+ Insert input`` button to set up the next steps. - - #. Change to ``Metadata from Artifact`` - #. Set *"Metadata Source"* to ``faith-pd-vector.qza`` - - - #. Expand the ``additional options`` section - - - Set *"page_size"* to ``25`` - - #. Press the ``Execute`` button. - -Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows: - (Renaming is optional, but it will make any subsequent steps easier to complete.) - - .. list-table:: - :align: left - :header-rows: 1 - - * - History Name - - *"Name"* to set (be sure to press ``Save``) - * - ``#: qiime2 metadata tabulate [...] : visualization.qzv`` - - ``demux-stats-viz.qzv`` - |