# HG changeset patch
# User q2d2
# Date 1714079841 0
# Node ID 2f4e088869d4cc5010af561da3a30ae521c66e01
# Parent  05d29a3294deee22af9fe90236b5fc6e036cd9df
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

diff -r 05d29a3294de -r 2f4e088869d4 qiime2__phylogeny__filter_table.xml
--- a/qiime2__phylogeny__filter_table.xml	Thu Jun 08 19:49:54 2023 +0000
+++ b/qiime2__phylogeny__filter_table.xml	Thu Apr 25 21:17:21 2024 +0000
@@ -1,38 +1,38 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Remove features from table if they're not present in tree.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version phylogeny</version_command>
     <command detect_errors="exit_code">q2galaxy run phylogeny filter_table '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³]" help="[required]  Feature table that features should be filtered from.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
                 <filter type="add_value" value="FeatureTable[Frequency]"/>
-                <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
                 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
         </param>
         <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted | Unrooted]" help="[required]  Tree where tip identifiers are the feature identifiers that should be retained in the table.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="Phylogeny[Unrooted]"/>
                 <filter type="add_value" value="Phylogeny[Rooted]"/>
-                <filter type="add_value" value="Phylogeny[Unrooted]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator>
         </param>
diff -r 05d29a3294de -r 2f4e088869d4 test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza
Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed