# HG changeset patch
# User q2d2
# Date 1746471434 0
# Node ID 818d20c622ede55ba2ca8c32eceb2fbc5de3886d
# Parent  d24d147a225dd9fc4fcf13adb6a3b0d9afe0b8a6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit b1fccfb38b4873cd4699743033449014a2978e7d

diff -r d24d147a225d -r 818d20c622ed qiime2__phylogeny__filter_tree.xml
--- a/qiime2__phylogeny__filter_tree.xml	Wed Oct 30 19:53:52 2024 +0000
+++ b/qiime2__phylogeny__filter_tree.xml	Mon May 05 18:57:14 2025 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2024, QIIME 2 development team.
+Copyright (c) 2025, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.10.0)
+    q2galaxy (version: 2025.4.0)
 for:
-    qiime2 (version: 2024.10.1)
+    qiime2 (version: 2025.4.0)
 -->
-<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
     <description>Remove features from tree based on metadata</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
     </requirements>
     <version_command>q2galaxy version phylogeny</version_command>
     <command detect_errors="exit_code">q2galaxy run phylogeny filter_tree '$inputs'</command>
@@ -34,9 +34,9 @@
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
             <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional]  Feature table which contains the identifier that should be retained in the tree">
                 <options options_filter_attribute="metadata.semantic_type">
+                    <filter type="add_value" value="FeatureTable[Composition]"/>
                     <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
                     <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
-                    <filter type="add_value" value="FeatureTable[Composition]"/>
                     <filter type="add_value" value="FeatureTable[Frequency]"/>
                 </options>
                 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
diff -r d24d147a225d -r 818d20c622ed test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza
Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed