Mercurial > repos > q2d2 > qiime2__phylogeny__robinson_foulds
comparison qiime2__phylogeny__robinson_foulds.xml @ 4:a43f0d5cfd3f draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit c7e80dcda727ce63b42aa8a946e9330310929797
| author | q2d2 |
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| date | Mon, 03 Jun 2024 23:30:08 +0000 |
| parents | cc749369d963 |
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| 3:cc749369d963 | 4:a43f0d5cfd3f |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2024.2.1) | 9 q2galaxy (version: 2024.5.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2024.2.0) | 11 qiime2 (version: 2024.5.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 phylogeny robinson-foulds" id="qiime2__phylogeny__robinson_foulds" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 phylogeny robinson-foulds" id="qiime2__phylogeny__robinson_foulds" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Calculate Robinson-Foulds distance between phylogenetic trees.</description> | 14 <description>Calculate Robinson-Foulds distance between phylogenetic trees.</description> |
| 15 <requirements> | 15 <requirements> |
| 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> | 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> |
| 17 </requirements> | 17 </requirements> |
| 18 <version_command>q2galaxy version phylogeny</version_command> | 18 <version_command>q2galaxy version phylogeny</version_command> |
| 19 <command detect_errors="exit_code">q2galaxy run phylogeny robinson_foulds '$inputs'</command> | 19 <command detect_errors="exit_code">q2galaxy run phylogeny robinson_foulds '$inputs'</command> |
| 20 <configfiles> | 20 <configfiles> |
| 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> | 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 22 </configfiles> | 22 </configfiles> |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="trees" type="data" format="qza" label="trees: List[Phylogeny[Rooted | Unrooted]]" help="[required] Phylogenetic trees to compare with Robinson-Foulds. Rooting information and branch lengths are ignored by this metric." multiple="true"> | 24 <param name="trees" type="data" format="qza" label="trees: List[Phylogeny[Rooted | Unrooted]]" help="[required] Phylogenetic trees to compare with Robinson-Foulds. Rooting information and branch lengths are ignored by this metric." multiple="true"> |
| 25 <options options_filter_attribute="metadata.semantic_type"> | 25 <options options_filter_attribute="metadata.semantic_type"> |
| 26 <filter type="add_value" value="Phylogeny[Rooted]"/> | |
| 26 <filter type="add_value" value="Phylogeny[Unrooted]"/> | 27 <filter type="add_value" value="Phylogeny[Unrooted]"/> |
| 27 <filter type="add_value" value="Phylogeny[Rooted]"/> | |
| 28 </options> | 28 </options> |
| 29 </param> | 29 </param> |
| 30 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | 30 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> |
| 31 <repeat name="labels" help="[optional] Labels to use for the tree names in the distance matrix. If ommited, labels will be "tree_n" where "n" ranges from 1..N. The number of labels must match the number of trees." title="labels: List[Str]"> | 31 <repeat name="labels" help="[optional] Labels to use for the tree names in the distance matrix. If ommited, labels will be "tree_n" where "n" ranges from 1..N. The number of labels must match the number of trees." title="labels: List[Str]"> |
| 32 <param name="element" type="text" label="element: Str" help="[required]"> | 32 <param name="element" type="text" label="element: Str" help="[required]"> |