# HG changeset patch
# User q2d2
# Date 1762018080 0
# Node ID 5fb18930a71825202e2cc0207fd04f87f20fafdc
# Parent  da82df33868e8fae3e937151ab2ea9fefbfc1067
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r da82df33868e -r 5fb18930a718 qiime2__phylogeny__robinson_foulds.xml
--- a/qiime2__phylogeny__robinson_foulds.xml	Tue Jul 15 22:02:49 2025 +0000
+++ b/qiime2__phylogeny__robinson_foulds.xml	Sat Nov 01 17:28:00 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.7.0)
+    q2galaxy (version: 2025.10.0)
 for:
-    qiime2 (version: 2025.7.0)
+    qiime2 (version: 2025.10.0)
 -->
-<tool name="qiime2 phylogeny robinson-foulds" id="qiime2__phylogeny__robinson_foulds" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 phylogeny robinson-foulds" id="qiime2__phylogeny__robinson_foulds" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Calculate Robinson-Foulds distance between phylogenetic trees.</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
     </requirements>
     <version_command>q2galaxy version phylogeny</version_command>
     <command detect_errors="exit_code">q2galaxy run phylogeny robinson_foulds '$inputs'</command>
@@ -26,8 +26,8 @@
     <inputs>
         <param name="trees" type="data" format="qza" label="trees: List[Phylogeny[Rooted | Unrooted]]" help="[required]  Phylogenetic trees to compare with Robinson-Foulds. Rooting information and branch lengths are ignored by this metric." multiple="true">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="Phylogeny[Rooted]"/>
                 <filter type="add_value" value="Phylogeny[Unrooted]"/>
-                <filter type="add_value" value="Phylogeny[Rooted]"/>
             </options>
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
diff -r da82df33868e -r 5fb18930a718 test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza
Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed