Mercurial > repos > q2d2 > qiime2__quality_control__bowtie2_build
diff qiime2__quality_control__bowtie2_build.xml @ 0:78420e8bfd49 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author | q2d2 |
---|---|
date | Mon, 29 Aug 2022 20:21:32 +0000 |
parents | |
children | dc6b98098f4f |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__quality_control__bowtie2_build.xml Mon Aug 29 20:21:32 2022 +0000 @@ -0,0 +1,72 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2022, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2022.8.1) +for: + qiime2 (version: 2022.8.1) +--> +<tool name="qiime2 quality-control bowtie2-build" id="qiime2__quality_control__bowtie2_build" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> + <description>Build bowtie2 index from reference sequences.</description> + <requirements> + <container type="docker">quay.io/qiime2/core:2022.8</container> + </requirements> + <version_command>q2galaxy version quality_control</version_command> + <command detect_errors="aggressive">q2galaxy run quality_control bowtie2_build '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="paths"/> + </configfiles> + <inputs> + <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required] Reference sequences used to build bowtie2 index."> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureData[Sequence]"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator> + </param> + <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> + <param name="n_threads" type="integer" min="1" value="1" label="n_threads: Int % Range(1, None)" help="[default: 1] Number of threads to launch"/> + </section> + </inputs> + <outputs> + <data name="database" format="qza" label="${tool.name} on ${on_string}: database.qza" from_work_dir="database.qza"/> + </outputs> + <tests/> + <help> +QIIME 2: quality-control bowtie2-build +====================================== +Build bowtie2 index from reference sequences. + + +Outputs: +-------- +:database.qza: Bowtie2 index. + +| + +Description: +------------ +Build bowtie2 index from reference sequences. + + +| + +</help> + <citations> + <citation type="bibtex">@article{cite1, + author = {Langmead, Ben and Salzberg, Steven L}, + journal = {Nature methods}, + number = {4}, + pages = {357}, + publisher = {Nature Publishing Group}, + title = {Fast gapped-read alignment with Bowtie 2}, + volume = {9}, + year = {2012} +} +</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool>