Mercurial > repos > q2d2 > qiime2__rescript__get_pr2_data
comparison qiime2__rescript__get_pr2_data.xml @ 2:a6cf55e065e0 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
| author | q2d2 |
|---|---|
| date | Sat, 01 Nov 2025 17:30:15 +0000 |
| parents | 528198f12435 |
| children |
comparison
equal
deleted
inserted
replaced
| 1:528198f12435 | 2:a6cf55e065e0 |
|---|---|
| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2025.7.0) | 9 q2galaxy (version: 2025.10.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2025.7.0) | 11 qiime2 (version: 2025.10.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 rescript get-pr2-data" id="qiime2__rescript__get_pr2_data" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 rescript get-pr2-data" id="qiime2__rescript__get_pr2_data" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Download, parse, and import SSU PR2 reference data.</description> | 14 <description>Download, parse, and import SSU PR2 reference data.</description> |
| 15 <xrefs> | 15 <xrefs> |
| 16 <xref type="bio.tools">qiime2</xref> | 16 <xref type="bio.tools">qiime2</xref> |
| 17 </xrefs> | 17 </xrefs> |
| 18 <requirements> | 18 <requirements> |
| 19 <container type="docker">quay.io/qiime2/amplicon:2025.7</container> | 19 <container type="docker">quay.io/qiime2/amplicon:2025.10</container> |
| 20 </requirements> | 20 </requirements> |
| 21 <version_command>q2galaxy version rescript</version_command> | 21 <version_command>q2galaxy version rescript</version_command> |
| 22 <command detect_errors="exit_code">q2galaxy run rescript get_pr2_data '$inputs'</command> | 22 <command detect_errors="exit_code">q2galaxy run rescript get_pr2_data '$inputs'</command> |
| 23 <configfiles> | 23 <configfiles> |
| 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> | 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 25 </configfiles> | 25 </configfiles> |
| 26 <inputs> | 26 <inputs> |
| 27 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | 27 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> |
| 28 <param name="version" type="select" label="version: Str % Choices('5.0.0', '4.14.0')" display="radio"> | 28 <param name="version" type="select" label="version: Str % Choices('5.1.0', '5.0.0')" display="radio"> |
| 29 <option value="5.0.0" selected="true">5.0.0</option> | 29 <option value="5.1.0" selected="true">5.1.0</option> |
| 30 <option value="4.14.0">4.14.0</option> | 30 <option value="5.0.0">5.0.0</option> |
| 31 </param> | 31 </param> |
| 32 <repeat name="ranks" help="[optional] List of taxonomic ranks for building a taxonomy from the PR2 Taxonomy database. Ranks can be provided as multiple separate flags, e.g.: `--p-ranks genus --p-ranks species`, or with a single flag delimited by a space: `--p-ranks genus species`. [default: 'domain', 'supergroup', 'division', 'subdivision', 'class', 'order', 'family', 'genus', 'species']" title="ranks: List[Str % Choices('domain', 'supergroup', 'division', 'subdivision', 'class', 'order', 'family', 'genus', 'species')]"> | 32 <repeat name="ranks" help="[optional] List of taxonomic ranks for building a taxonomy from the PR2 Taxonomy database. Ranks can be provided as multiple separate flags, e.g.: `--p-ranks genus --p-ranks species`, or with a single flag delimited by a space: `--p-ranks genus species`. [default: 'domain', 'supergroup', 'division', 'subdivision', 'class', 'order', 'family', 'genus', 'species']" title="ranks: List[Str % Choices('domain', 'supergroup', 'division', 'subdivision', 'class', 'order', 'family', 'genus', 'species')]"> |
| 33 <param name="element" type="select" label="element: Str % Choices('domain', 'supergroup', 'division', 'subdivision', 'class', 'order', 'family', 'genus', 'species')"> | 33 <param name="element" type="select" label="element: Str % Choices('domain', 'supergroup', 'division', 'subdivision', 'class', 'order', 'family', 'genus', 'species')"> |
| 34 <option value="__q2galaxy__::literal::None">Selection required</option> | 34 <option value="__q2galaxy__::literal::None">Selection required</option> |
| 35 <option value="domain">domain</option> | 35 <option value="domain">domain</option> |