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comparison qiime2__rescript__get_silva_data.xml @ 2:20d1a7bf2757 draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:54:32 +0000
parents e46b70a4eccd
children
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1:e46b70a4eccd 2:20d1a7bf2757
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.5.0) 9 q2galaxy (version: 2024.10.0)
10 for: 10 for:
11 qiime2 (version: 2024.5.0) 11 qiime2 (version: 2024.10.1)
12 --> 12 -->
13 <tool name="qiime2 rescript get-silva-data" id="qiime2__rescript__get_silva_data" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 rescript get-silva-data" id="qiime2__rescript__get_silva_data" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
14 <description>Download, parse, and import SILVA database.</description> 14 <description>Download, parse, and import SILVA database.</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
15 <requirements> 18 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> 19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
17 </requirements> 20 </requirements>
18 <version_command>q2galaxy version rescript</version_command> 21 <version_command>q2galaxy version rescript</version_command>
19 <command detect_errors="exit_code">q2galaxy run rescript get_silva_data '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run rescript get_silva_data '$inputs'</command>
20 <configfiles> 23 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 25 </configfiles>
23 <inputs> 26 <inputs>
24 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 27 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
25 <param name="version" type="select" label="version: Str % Choices('128', '132')¹ | Str % Choices('138')² | Str % Choices('138.1')³" help="[default: '138.1'] SILVA database version to download."> 28 <param name="version" type="select" label="version: Str % Choices('128', '132')¹ | Str % Choices('138')² | Str % Choices('138.1', '138.2')³" help="[default: '138.2'] SILVA database version to download.">
26 <option value="128">128 (Str)</option> 29 <option value="128">128 (Str)</option>
27 <option value="132">132 (Str)</option> 30 <option value="132">132 (Str)</option>
28 <option value="138">138 (Str)</option> 31 <option value="138">138 (Str)</option>
29 <option value="138.1" selected="true">138.1 (Str)</option> 32 <option value="138.1">138.1 (Str)</option>
33 <option value="138.2" selected="true">138.2 (Str)</option>
30 </param> 34 </param>
31 <param name="target" type="select" label="target: Str % Choices('SSURef_NR99', 'SSURef', 'LSURef')¹ | Str % Choices('SSURef_NR99', 'SSURef')² | Str % Choices('SSURef_NR99', 'SSURef', 'LSURef_NR99', 'LSURef')³" help="[default: 'SSURef_NR99'] Reference sequence target to download. SSURef = redundant small subunit reference. LSURef = redundant large subunit reference. SSURef_NR99 = non-redundant (clustered at 99% similarity) small subunit reference."> 35 <param name="target" type="select" label="target: Str % Choices('SSURef_NR99', 'SSURef', 'LSURef')¹ | Str % Choices('SSURef_NR99', 'SSURef')² | Str % Choices('SSURef_NR99', 'SSURef', 'LSURef_NR99', 'LSURef')³" help="[default: 'SSURef_NR99'] Reference sequence target to download. SSURef = redundant small subunit reference. LSURef = redundant large subunit reference. SSURef_NR99 = non-redundant (clustered at 99% similarity) small subunit reference.">
32 <option value="SSURef_NR99" selected="true">SSURef_NR99 (Str)</option> 36 <option value="SSURef_NR99" selected="true">SSURef_NR99 (Str)</option>
33 <option value="SSURef">SSURef (Str)</option> 37 <option value="SSURef">SSURef (Str)</option>
34 <option value="LSURef">LSURef (Str)</option> 38 <option value="LSURef">LSURef (Str)</option>