Mercurial > repos > q2d2 > qiime2__rescript__subsample_fasta
changeset 0:d5e86058d290 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:20:40 +0000 |
| parents | |
| children | |
| files | qiime2__rescript__subsample_fasta.xml test-data/.gitkeep |
| diffstat | 1 files changed, 64 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__rescript__subsample_fasta.xml Thu Apr 25 21:20:40 2024 +0000 @@ -0,0 +1,64 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2024, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2024.2.1) +for: + qiime2 (version: 2024.2.0) +--> +<tool name="qiime2 rescript subsample-fasta" id="qiime2__rescript__subsample_fasta" version="2024.2.2+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> + <description>Subsample an indicated number of sequences from a FASTA file.</description> + <requirements> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> + </requirements> + <version_command>q2galaxy version rescript</version_command> + <command detect_errors="exit_code">q2galaxy run rescript subsample_fasta '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="staging_path_and_source_path"/> + </configfiles> + <inputs> + <param name="sequences" type="data" format="qza" label="sequences: FeatureData[AlignedSequence¹ | Sequence²]" help="[required] Sequences to subsample from."> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureData[AlignedSequence]"/> + <filter type="add_value" value="FeatureData[Sequence]"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator> + </param> + <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> + <param name="subsample_size" type="float" min="1e-06" max="1" value="0.1" label="subsample_size: Float % Range(0, 1, inclusive_start=False, inclusive_end=True)" help="[default: 0.1] Size of the random sample as a fraction of the total count"/> + <param name="random_seed" type="integer" min="1" value="1" label="random_seed: Int % Range(1, None)" help="[default: 1] Seed to be used for random sampling."/> + </section> + </inputs> + <outputs> + <data name="sample_sequences" format="qza" label="${tool.name} on ${on_string}: sample_sequences.qza" from_work_dir="sample_sequences.qza"/> + </outputs> + <tests/> + <help> +QIIME 2: rescript subsample-fasta +================================= +Subsample an indicated number of sequences from a FASTA file. + + +Outputs: +-------- +:sample_sequences.qza: Sample of original sequences. + +| + +Description: +------------ +Subsample a set of sequences (either plain or aligned DNA)based on a fraction of original sequences. + + +| + +</help> + <citations> + <citation type="doi">10.1371/journal.pcbi.1009581</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool>