# HG changeset patch # User q2d2 # Date 1661804780 0 # Node ID 9d749a1b0f69cbbd2ff32b08ddeb48c26b92b67f planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 diff -r 000000000000 -r 9d749a1b0f69 qiime2__sample_classifier__heatmap.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__sample_classifier__heatmap.xml Mon Aug 29 20:26:20 2022 +0000 @@ -0,0 +1,345 @@ + + + + + Generate heatmap of important features. + + quay.io/qiime2/core:2022.8 + + q2galaxy version sample_classifier + q2galaxy run sample_classifier heatmap '$inputs' + + + + + + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]'] + + + + + + hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Importance]'] + +

+ + + + + + + + + + + value != "1" + + + + + + + + + + + + + + + + + + + + value != "1" + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

+ + + + + + + +QIIME 2: sample-classifier heatmap +================================== +Generate heatmap of important features. + + +Outputs: +-------- +:heatmap.qzv: Heatmap of important features. +:filtered_table.qza: Filtered feature table containing data displayed in heatmap. + +| + +Description: +------------ +Generate a heatmap of important features. Features are filtered based on importance scores; samples are optionally grouped by sample metadata; and a heatmap is generated that displays (normalized) feature abundances per sample. + + +| + + + + 10.21105/joss.00934 + @article{cite2, + author = {Pedregosa, Fabian and Varoquaux, Gaël and Gramfort, Alexandre and Michel, Vincent and Thirion, Bertrand and Grisel, Olivier and Blondel, Mathieu and Prettenhofer, Peter and Weiss, Ron and Dubourg, Vincent and Vanderplas, Jake and Passos, Alexandre and Cournapeau, David and Brucher, Matthieu and Perrot, Matthieu and Duchesnay, Édouard}, + journal = {Journal of machine learning research}, + number = {Oct}, + pages = {2825--2830}, + title = {Scikit-learn: Machine learning in Python}, + volume = {12}, + year = {2011} +} + + 10.1038/s41587-019-0209-9 + + diff -r 000000000000 -r 9d749a1b0f69 test-data/.gitkeep