Mercurial > repos > q2d2 > qiime2__sample_classifier__metatable
comparison qiime2__sample_classifier__metatable.xml @ 7:f03200f2248b draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0
| author | q2d2 |
|---|---|
| date | Tue, 15 Jul 2025 22:05:13 +0000 |
| parents | 63930077c13a |
| children |
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| 6:63930077c13a | 7:f03200f2248b |
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| 4 | 4 |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
| 6 --> | 6 --> |
| 7 <!-- | 7 <!-- |
| 8 This tool was automatically generated by: | 8 This tool was automatically generated by: |
| 9 q2galaxy (version: 2025.4.0) | 9 q2galaxy (version: 2025.7.0) |
| 10 for: | 10 for: |
| 11 qiime2 (version: 2025.4.0) | 11 qiime2 (version: 2025.7.0) |
| 12 --> | 12 --> |
| 13 <tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause"> | 13 <tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause"> |
| 14 <description>Convert (and merge) positive numeric metadata (in)to feature table.</description> | 14 <description>Convert (and merge) positive numeric metadata (in)to feature table.</description> |
| 15 <xrefs> | 15 <xrefs> |
| 16 <xref type="bio.tools">qiime2</xref> | 16 <xref type="bio.tools">qiime2</xref> |
| 17 </xrefs> | 17 </xrefs> |
| 18 <requirements> | 18 <requirements> |
| 19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container> | 19 <container type="docker">quay.io/qiime2/amplicon:2025.7</container> |
| 20 </requirements> | 20 </requirements> |
| 21 <version_command>q2galaxy version sample_classifier</version_command> | 21 <version_command>q2galaxy version sample_classifier</version_command> |
| 22 <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command> | 22 <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command> |
| 23 <configfiles> | 23 <configfiles> |
| 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> | 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
| 39 </conditional> | 39 </conditional> |
| 40 </repeat> | 40 </repeat> |
| 41 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | 41 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> |
| 42 <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table containing all features that should be used for target prediction."> | 42 <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table containing all features that should be used for target prediction."> |
| 43 <options options_filter_attribute="metadata.semantic_type"> | 43 <options options_filter_attribute="metadata.semantic_type"> |
| 44 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> | |
| 44 <filter type="add_value" value="FeatureTable[Composition]"/> | 45 <filter type="add_value" value="FeatureTable[Composition]"/> |
| 45 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> | 46 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> |
| 46 <filter type="add_value" value="FeatureTable[Frequency]"/> | 47 <filter type="add_value" value="FeatureTable[Frequency]"/> |
| 47 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> | |
| 48 </options> | 48 </options> |
| 49 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> | 49 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> |
| 50 </param> | 50 </param> |
| 51 <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio"> | 51 <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio"> |
| 52 <option value="error">error</option> | 52 <option value="error">error</option> |