annotate qiime2__stats__collate_stats.xml @ 0:10e19418eedb draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:58:26 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
1 <?xml version='1.0' encoding='utf-8'?>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
2 <!--
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
3 Copyright (c) 2024, QIIME 2 development team.
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
4
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
6 -->
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
7 <!--
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
8 This tool was automatically generated by:
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
9 q2galaxy (version: 2024.10.0)
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
10 for:
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
11 qiime2 (version: 2024.10.1)
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
12 -->
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
13 <tool name="qiime2 stats collate-stats" id="qiime2__stats__collate_stats" version="0+unknown-q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
14 <description>Combine and FDR correct multiple stats</description>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
15 <xrefs>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
16 <xref type="bio.tools">qiime2</xref>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
17 </xrefs>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
18 <requirements>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
20 </requirements>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
21 <version_command>q2galaxy version stats</version_command>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
22 <command detect_errors="exit_code">q2galaxy run stats collate_stats '$inputs'</command>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
23 <configfiles>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
25 </configfiles>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
26 <inputs>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
27 <param name="tables" type="data" format="qza" label="tables: Collection[StatsTable[Pairwise]]" help="[required]" multiple="true">
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
28 <options options_filter_attribute="metadata.semantic_type">
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
29 <filter type="add_value" value="StatsTable[Pairwise]"/>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
30 </options>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
31 </param>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
32 </inputs>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
33 <outputs>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
34 <data name="table" format="qza" label="${tool.name} on ${on_string}: table.qza" from_work_dir="table.qza"/>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
35 </outputs>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
36 <tests/>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
37 <help>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
38 QIIME 2: stats collate-stats
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
39 ============================
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
40 Combine and FDR correct multiple stats
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
41
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
42
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
43 Outputs:
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
44 --------
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
45 :table.qza: &lt;no description&gt;
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
46
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
47 |
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
48
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
49 Description:
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
50 ------------
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
51 Converts a collection of stats tables into a single table
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
52
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
53
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
54 |
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
55
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
56 </help>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
57 <citations>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
58 <citation type="doi">10.1038/s41587-019-0209-9</citation>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
59 </citations>
10e19418eedb planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents:
diff changeset
60 </tool>