annotate qiime2__stats__facet_across.xml @ 0:caf764ebca30 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:57:22 +0000 (5 weeks ago)
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caf764ebca30 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2024, QIIME 2 development team.
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4
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2024.10.0)
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10 for:
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11 qiime2 (version: 2024.10.1)
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12 -->
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13 <tool name="qiime2 stats facet-across" id="qiime2__stats__facet_across" version="0+unknown-q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
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14 <description>Facet across outer group</description>
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15 <xrefs>
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16 <xref type="bio.tools">qiime2</xref>
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17 </xrefs>
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18 <requirements>
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19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
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20 </requirements>
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21 <version_command>q2galaxy version stats</version_command>
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22 <command detect_errors="exit_code">q2galaxy run stats facet_across '$inputs'</command>
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23 <configfiles>
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24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
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25 </configfiles>
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26 <inputs>
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27 <param name="distribution" type="data" format="qza" label="distribution: Dist1D[NestedOrdered¹ | NestedUnordered², Independent¹ | Matched²]" help="[required] A nested Dist1D which will be partitioned into non-nested Dist1D">
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28 <options options_filter_attribute="metadata.semantic_type">
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29 <filter type="add_value" value="Dist1D[NestedOrdered, Matched]"/>
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30 <filter type="add_value" value="Dist1D[NestedUnordered, Matched]"/>
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31 <filter type="add_value" value="Dist1D[NestedOrdered, Independent]"/>
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32 <filter type="add_value" value="Dist1D[NestedUnordered, Independent]"/>
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33 </options>
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34 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Dist1D[NestedOrdered, Independent]', 'Dist1D[NestedOrdered, Matched]', 'Dist1D[NestedUnordered, Independent]', 'Dist1D[NestedUnordered, Matched]']</validator>
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35 </param>
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36 </inputs>
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37 <outputs>
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38 <collection name="distributions" type="list">
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39 <discover_datasets directory="distributions" pattern="__name_and_ext__"/>
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40 </collection>
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41 </outputs>
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42 <tests/>
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43 <help>
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44 QIIME 2: stats facet-across
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45 ===========================
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46 Facet across outer group
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47
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48
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49 Outputs:
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50 --------
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51 :distributions.qza: A collection of non-nested Dist1Ds
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52
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53 |
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54
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55 Description:
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56 ------------
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57 Facet a distribution into per-class/level distributions where each facet preserves the outer group structure.
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58
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59
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60 |
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61
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62 </help>
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63 <citations>
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64 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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65 </citations>
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66 </tool>