annotate qiime2__stats__wilcoxon_srt_facet.xml @ 3:8305555fcc10 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2025, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.10.0)
for:
    qiime2 (version: 2025.10.0)
-->
<tool name="qiime2 stats wilcoxon-srt-facet" id="qiime2__stats__wilcoxon_srt_facet" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
    <description>Per-facet Wilcoxon Signed Rank Test</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
    </requirements>
    <version_command>q2galaxy version stats</version_command>
    <command detect_errors="exit_code">q2galaxy run stats wilcoxon_srt_facet '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>
    </configfiles>
    <inputs>
        <param name="distribution" type="data" format="qza" label="distribution: Dist1D[Multi | NestedOrdered | NestedUnordered, Matched]" help="[required]">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="Dist1D[NestedUnordered, Matched]"/>
                <filter type="add_value" value="Dist1D[Multi, Matched]"/>
                <filter type="add_value" value="Dist1D[NestedOrdered, Matched]"/>
            </options>
            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Dist1D[Multi, Matched]', 'Dist1D[NestedOrdered, Matched]', 'Dist1D[NestedUnordered, Matched]']</validator>
        </param>
        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
            <param name="ignore_empty_comparator" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="ignore_empty_comparator: Bool" help="[default: Yes]  Ignore any group that does not have any overlapping subjects with comparison group. These groups will have NaNs in the stats table output"/>
        </section>
    </inputs>
    <outputs>
        <data name="stats" format="qza" label="${tool.name} on ${on_string}: stats.qza" from_work_dir="stats.qza"/>
    </outputs>
    <tests>
        <test>
            <param name="distribution" value="wilcoxon_srt_facet.test0.dist.qza" ftype="qza"/>
            <output name="stats" ftype="qza"/>
        </test>
    </tests>
    <help>
QIIME 2: stats wilcoxon-srt-facet
=================================
Per-facet Wilcoxon Signed Rank Test


Outputs:
--------
:stats.qza: &lt;no description&gt;

|  

Description:
------------


Examples:
---------

wilcoxon_srt_facet
******************
Using the ``qiime2 stats wilcoxon-srt-facet`` tool:
 #. Set *"distribution"* to ``#: dist.qza``
 #. Press the ``Execute`` button.



|  

</help>
    <citations>
        <citation type="doi">https://doi.org/10.2307/3001968</citation>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>