# HG changeset patch
# User q2d2
# Date 1730318339 0
# Node ID 765052908e52d107bee0332ab5095eed8fdfc77d

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vizard commit 5f71b597c9495eae67a447744fded834f56ca1f7

diff -r 000000000000 -r 765052908e52 qiime2__vizard__boxplot.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__vizard__boxplot.xml	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,118 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2024, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2024.10.0)
+for:
+    qiime2 (version: 2024.10.1)
+-->
+<tool name="qiime2 vizard boxplot" id="qiime2__vizard__boxplot" version="0.0.1.dev0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
+    <description>Boxplot</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+    </requirements>
+    <version_command>q2galaxy version vizard</version_command>
+    <command detect_errors="exit_code">q2galaxy run vizard boxplot '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <repeat name="metadata" min="1" help="[required]  Any metadata-like input with at least one numeric measure and one categorical measure for visualizing." title="metadata: Metadata">
+            <conditional name="__q2galaxy__GUI__conditional__metadata__">
+                <param name="type" type="select" label="metadata: Metadata">
+                    <option value="tsv" selected="true">Metadata from TSV</option>
+                    <option value="qza">Metadata from Artifact</option>
+                </param>
+                <when value="tsv">
+                    <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
+                </when>
+                <when value="qza">
+                    <param name="source" type="data" format="qza" label="Metadata Source"/>
+                </when>
+            </conditional>
+        </repeat>
+        <param name="distribution_measure" type="text" label="distribution_measure: Str" help="[required]  The numeric measure that will be used to create each box plot distribution.">
+            <sanitizer>
+                <valid initial="string.printable"/>
+            </sanitizer>
+            <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
+        </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <conditional name="__q2galaxy__GUI__conditional__group_by__" label="group_by: Str">
+                <param name="__q2galaxy__GUI__select__" type="select" label="group_by: Str" help="[optional]  The categorical measure that will be used to group the data into separate box plots. If left blank, all data will be represented within a single box.">
+                    <option value="__q2galaxy__::control::default" selected="true">None (Use default behavior)</option>
+                    <option value="__q2galaxy__::control::provide">Provide a value</option>
+                </param>
+                <when value="__q2galaxy__::control::default">
+                    <param name="group_by" type="hidden" value="__q2galaxy__::literal::None"/>
+                </when>
+                <when value="__q2galaxy__::control::provide">
+                    <param name="group_by" type="text">
+                        <sanitizer>
+                            <valid initial="string.printable"/>
+                        </sanitizer>
+                    </param>
+                </when>
+            </conditional>
+            <param name="whisker_range" type="select" label="whisker_range: Str % Choices('tukeys_iqr', 'percentile', 'minmax')" display="radio">
+                <option value="tukeys_iqr">tukeys_iqr</option>
+                <option value="percentile" selected="true">percentile</option>
+                <option value="minmax">minmax</option>
+            </param>
+            <param name="box_orientation" type="select" label="box_orientation: Str % Choices('horizontal', 'vertical')" display="radio">
+                <option value="horizontal" selected="true">horizontal</option>
+                <option value="vertical">vertical</option>
+            </param>
+            <conditional name="__q2galaxy__GUI__conditional__title__" label="title: Str">
+                <param name="__q2galaxy__GUI__select__" type="select" label="title: Str" help="[optional]  The title of the boxplot.">
+                    <option value="__q2galaxy__::control::default" selected="true">None (Use default behavior)</option>
+                    <option value="__q2galaxy__::control::provide">Provide a value</option>
+                </param>
+                <when value="__q2galaxy__::control::default">
+                    <param name="title" type="hidden" value="__q2galaxy__::literal::None"/>
+                </when>
+                <when value="__q2galaxy__::control::provide">
+                    <param name="title" type="text">
+                        <sanitizer>
+                            <valid initial="string.printable"/>
+                        </sanitizer>
+                    </param>
+                </when>
+            </conditional>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: vizard boxplot
+=======================
+Boxplot
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Basic boxplot for visualizing a numeric Metadata measure grouped by a categorical Metadata measure with choices for the whisker range.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r 765052908e52 test-data/heatmap.test0.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/heatmap.test0.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/lineplot.test0.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lineplot.test0.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/lineplot.test1.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lineplot.test1.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/lineplot.test2.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lineplot.test2.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/lineplot.test3.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lineplot.test3.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/lineplot.test4.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lineplot.test4.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/lineplot.test5.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/lineplot.test5.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/scatterplot_2d.test0.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/scatterplot_2d.test0.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60
diff -r 000000000000 -r 765052908e52 test-data/scatterplot_2d.test1.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/scatterplot_2d.test1.metadata.tsv	Wed Oct 30 19:58:59 2024 +0000
@@ -0,0 +1,21 @@
+sample_name	group	x	y	a	b
+#q2:types	categorical	numeric	numeric	numeric	numeric
+sample01	aa	4	6	1	1
+sample02	aa	5	9	2	2
+sample03	aa	3	1	3	3
+sample04	aa	5	3	4	5
+sample05	aa	5	7	5	8
+sample06	bb	2	4	1	10
+sample07	bb	3	9	2	15
+sample08	bb	3	3	3	20
+sample09	bb	5	5	4	22
+sample10	bb	4	3	5	27
+sample11	bb	3	7	6	33
+sample12	bb	5	5	7	36
+sample13	bb	2	9	8	39
+sample14	cc	4	7	1	40
+sample15	cc	2	2	2	41
+sample16	cc	4	4	3	43
+sample17	cc	5	9	4	47
+sample18	cc	1	2	5	50
+sample19	cc	4	9	6	60