comparison qiime2__vizard__lineplot.xml @ 1:0b666cc4e746 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vizard commit b1fccfb38b4873cd4699743033449014a2978e7d

0:df9f1ff48c29

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2024, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2024.10.0)
for:
    qiime2 (version: 2024.10.1)
-->
<tool name="qiime2 vizard lineplot" id="qiime2__vizard__lineplot" version="0.0.1.dev0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
    <description>Lineplot</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
    </requirements>
    <version_command>q2galaxy version vizard</version_command>
    <command detect_errors="exit_code">q2galaxy run vizard lineplot '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>

            <sanitizer>
                <valid initial="string.printable"/>
            </sanitizer>
            <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
        </param>
        <param name="y_measure" type="text" label="y_measure: Str" help="[required]  Numeric measure from the input Metadata that should be plotted on the y-axis.">
            <sanitizer>
                <valid initial="string.printable"/>
            </sanitizer>
            <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
        </param>
        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
            <param name="replicate_method" type="select" label="replicate_method: Str % Choices('none', 'median', 'mean')" display="radio">
                <option value="none" selected="true">none</option>
                <option value="median">median</option>
                <option value="mean">mean</option>
            </param>

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Set *"y_measure"* to ``y``
 #. Expand the ``additional options`` section

    #. Set *"replicate_method"* to ``median``
    #. Set *"group_by"* to ``group``
    #. Set *"title"* to ``Lineplot with median replicate method, grouped by `group`.``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Set *"y_measure"* to ``y``
 #. Expand the ``additional options`` section

    #. Set *"replicate_method"* to ``mean``
    #. Set *"group_by"* to ``group``
    #. Set *"title"* to ``Lineplot with mean replicate method, grouped by `group`.``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Set *"y_measure"* to ``y``
 #. Expand the ``additional options`` section

    #. Set *"replicate_method"* to ``median``
    #. Set *"title"* to ``Lineplot with median replicate method (no grouping).``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Set *"y_measure"* to ``y``
 #. Expand the ``additional options`` section

    #. Set *"replicate_method"* to ``mean``
    #. Set *"title"* to ``Lineplot with mean replicate method (no grouping).``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``a``
 #. Set *"y_measure"* to ``y``
 #. Expand the ``additional options`` section

    #. Set *"group_by"* to ``group``
    #. Set *"title"* to ``Lineplot with no replicate method, grouped by `group`.``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``b``
 #. Set *"y_measure"* to ``y``
 #. Expand the ``additional options`` section

    - Set *"title"* to ``Lineplot with no replicate method (no grouping).``

 #. Press the ``Execute`` button.

Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
 (Renaming is optional, but it will make any subsequent steps easier to complete.)

1:0b666cc4e746

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2025, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.4.0)
for:
    qiime2 (version: 2025.4.0)
-->
<tool name="qiime2 vizard lineplot" id="qiime2__vizard__lineplot" version="0.0.1.dev0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
    <description>Lineplot</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
    </requirements>
    <version_command>q2galaxy version vizard</version_command>
    <command detect_errors="exit_code">q2galaxy run vizard lineplot '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>

            <sanitizer>
                <valid initial="string.printable"/>
            </sanitizer>
            <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
        </param>
        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
            <conditional name="__q2galaxy__GUI__conditional__y_measure__" label="y_measure: Str">
                <param name="__q2galaxy__GUI__select__" type="select" label="y_measure: Str" help="[optional]  Numeric measure from the input Metadata that should be plotted on the y-axis.">
                    <option value="__q2galaxy__::control::default" selected="true">None (Use default behavior)</option>
                    <option value="__q2galaxy__::control::provide">Provide a value</option>
                </param>
                <when value="__q2galaxy__::control::default">
                    <param name="y_measure" type="hidden" value="__q2galaxy__::literal::None"/>
                </when>
                <when value="__q2galaxy__::control::provide">
                    <param name="y_measure" type="text">
                        <sanitizer>
                            <valid initial="string.printable"/>
                        </sanitizer>
                    </param>
                </when>
            </conditional>
            <param name="replicate_method" type="select" label="replicate_method: Str % Choices('none', 'median', 'mean')" display="radio">
                <option value="none" selected="true">none</option>
                <option value="median">median</option>
                <option value="mean">mean</option>
            </param>

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Expand the ``additional options`` section

    #. Set *"y_measure"* to ``y``
    #. Set *"replicate_method"* to ``median``
    #. Set *"group_by"* to ``group``
    #. Set *"title"* to ``Lineplot with median replicate method, grouped by `group`.``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Expand the ``additional options`` section

    #. Set *"y_measure"* to ``y``
    #. Set *"replicate_method"* to ``mean``
    #. Set *"group_by"* to ``group``
    #. Set *"title"* to ``Lineplot with mean replicate method, grouped by `group`.``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Expand the ``additional options`` section

    #. Set *"y_measure"* to ``y``
    #. Set *"replicate_method"* to ``median``
    #. Set *"title"* to ``Lineplot with median replicate method (no grouping).``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``x``
 #. Expand the ``additional options`` section

    #. Set *"y_measure"* to ``y``
    #. Set *"replicate_method"* to ``mean``
    #. Set *"title"* to ``Lineplot with mean replicate method (no grouping).``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``a``
 #. Expand the ``additional options`` section

    #. Set *"y_measure"* to ``y``
    #. Set *"group_by"* to ``group``
    #. Set *"title"* to ``Lineplot with no replicate method, grouped by `group`.``

 #. Press the ``Execute`` button.

      #. Leave as ``Metadata from TSV``
      #. Set *"Metadata Source"* to ``metadata.tsv``


 #. Set *"x_measure"* to ``b``
 #. Expand the ``additional options`` section

    #. Set *"y_measure"* to ``y``
    #. Set *"title"* to ``Lineplot with no replicate method (no grouping).``

 #. Press the ``Execute`` button.

Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
 (Renaming is optional, but it will make any subsequent steps easier to complete.)