comparison qiime2__vsearch__cluster_features_closed_reference.xml @ 3:6f09e0279672 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:27:37 +0000
parents 99f3bb0084fe
children
comparison
equal deleted inserted replaced
2:99f3bb0084fe 3:6f09e0279672
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 vsearch cluster-features-closed-reference" id="qiime2__vsearch__cluster_features_closed_reference" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 vsearch cluster-features-closed-reference" id="qiime2__vsearch__cluster_features_closed_reference" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>Closed-reference clustering of features.</description> 14 <description>Closed-reference clustering of features.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version vsearch</version_command> 18 <version_command>q2galaxy version vsearch</version_command>
19 <command detect_errors="exit_code">q2galaxy run vsearch cluster_features_closed_reference '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run vsearch cluster_features_closed_reference '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required] The sequences corresponding to the features in table."> 24 <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required] The sequences corresponding to the features in table.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureData[Sequence]"/> 26 <filter type="add_value" value="FeatureData[Sequence]"/>
43 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 43 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
44 <param name="strand" type="select" label="strand: Str % Choices('plus', 'both')" display="radio"> 44 <param name="strand" type="select" label="strand: Str % Choices('plus', 'both')" display="radio">
45 <option value="plus" selected="true">plus</option> 45 <option value="plus" selected="true">plus</option>
46 <option value="both">both</option> 46 <option value="both">both</option>
47 </param> 47 </param>
48 <param name="threads" type="integer" min="0" max="256" value="1" label="threads: Int % Range(0, 256, inclusive_end=True)" help="[default: 1] The number of threads to use for computation. Passing 0 will launch one thread per CPU core."/>
49 </section> 48 </section>
50 </inputs> 49 </inputs>
51 <outputs> 50 <outputs>
52 <data name="clustered_table" format="qza" label="${tool.name} on ${on_string}: clustered_table.qza" from_work_dir="clustered_table.qza"/> 51 <data name="clustered_table" format="qza" label="${tool.name} on ${on_string}: clustered_table.qza" from_work_dir="clustered_table.qza"/>
53 <data name="clustered_sequences" format="qza" label="${tool.name} on ${on_string}: clustered_sequences.qza" from_work_dir="clustered_sequences.qza"/> 52 <data name="clustered_sequences" format="qza" label="${tool.name} on ${on_string}: clustered_sequences.qza" from_work_dir="clustered_sequences.qza"/>