Mercurial > repos > q2d2 > qiime2__vsearch__uchime_denovo

comparison qiime2__vsearch__uchime_denovo.xml @ 1:a02a20641fb6 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author q2d2
date Fri, 13 Jan 2023 23:01:52 +0000
parents f54b059e52a9
children 2ecd644cdfcf
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0:f54b059e52a9 1:a02a20641fb6
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2022, QIIME 2 development team. 3 Copyright (c) 2023, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2022.8.1) 9 q2galaxy (version: 2022.11.1)
10 for: 10 for:
11 qiime2 (version: 2022.8.1) 11 qiime2 (version: 2022.11.1)
12 --> 12 -->
13 <tool name="qiime2 vsearch uchime-denovo" id="qiime2__vsearch__uchime_denovo" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 vsearch uchime-denovo" id="qiime2__vsearch__uchime_denovo" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
14 <description>De novo chimera filtering with vsearch.</description> 14 <description>De novo chimera filtering with vsearch.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2022.8</container> 16 <container type="docker">quay.io/qiime2/core:2022.11</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version vsearch</version_command> 18 <version_command>q2galaxy version vsearch</version_command>
19 <command detect_errors="aggressive">q2galaxy run vsearch uchime_denovo '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run vsearch uchime_denovo '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="paths"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required] The feature sequences to be chimera-checked."> 24 <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required] The feature sequences to be chimera-checked.">
61 61
62 | 62 |
63 63
64 Description: 64 Description:
65 ------------ 65 ------------
66 Apply the vsearch uchime_denovo method to identify chimeric feature sequences. The results of this method can be used to filter chimeric features from the corresponding feature table. For additional details, please refer to the vsearch documentation. 66 Apply the vsearch uchime_denovo method to identify chimeric feature sequences. The results of this method can be used to filter chimeric features from the corresponding feature table. For more details, please refer to the vsearch documentation.
67 67
68 68
69 | 69 |
70 70
71 </help> 71 </help>