diff qiime2__vsearch__uchime_ref.xml @ 3:e9b3abbe198e draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

--- a/qiime2__vsearch__uchime_ref.xml	Thu Jun 08 19:52:55 2023 +0000
+++ b/qiime2__vsearch__uchime_ref.xml	Thu Apr 25 21:27:40 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 vsearch uchime-ref" id="qiime2__vsearch__uchime_ref" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 vsearch uchime-ref" id="qiime2__vsearch__uchime_ref" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Reference-based chimera filtering with vsearch.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version vsearch</version_command>
     <command detect_errors="exit_code">q2galaxy run vsearch uchime_ref '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required]  The feature sequences to be chimera-checked.">
@@ -45,7 +45,6 @@
             <param name="mindiv" type="float" min="0.0" value="0.8" label="mindiv: Float % Range(0.0, None)" help="[default: 0.8]  Minimum divergence from closest parent."/>
             <param name="minh" type="float" min="0.0" max="1.0" value="0.28" label="minh: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.28]  Minimum score (h). Increasing this value tends to reduce the number of false positives and to decrease sensitivity."/>
             <param name="xn" type="float" min="1.000001" value="8.0" label="xn: Float % Range(1.0, None, inclusive_start=False)" help="[default: 8.0]  No vote weight, corresponding to the parameter beta in the scoring function."/>
-            <param name="threads" type="integer" min="0" max="256" value="1" label="threads: Int % Range(0, 256, inclusive_end=True)" help="[default: 1]  The number of threads to use for computation. Passing 0 will launch one thread per CPU core."/>
         </section>
     </inputs>
     <outputs>