Mercurial > repos > qfab > collector_curve
changeset 1:03ab673e45cb draft
Uploaded
| author | qfab |
|---|---|
| date | Fri, 30 May 2014 03:32:49 -0400 |
| parents | f4d86766f766 |
| children | 3e3b28ca608e |
| files | collectorcurve/collectorcurve.xml collectorcurve/test-data/output.tabular collectorcurve/test-data/reads2otus.rabund |
| diffstat | 3 files changed, 12 insertions(+), 9 deletions(-) [+] |
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--- a/collectorcurve/collectorcurve.xml Fri May 30 03:16:03 2014 -0400 +++ b/collectorcurve/collectorcurve.xml Fri May 30 03:32:49 2014 -0400 @@ -108,14 +108,6 @@ <outputs> <data format="tabular" name="output" label="${tool.name} on ${on_string}: tab" /> </outputs> - <tests> - <test> - <param name="otu" value="reads2otu.rabund" /> - <param name="label" value="0.03" /> - <param name="calc" value="chao-invsimpson-npshannon" /> - <output name="output" file="collectorsummary.tabular" ftype="tabular" lines_diff="10" /> - </test> - </tests> <help> =========== Description @@ -257,6 +249,14 @@ QFAB Bioinformatics (support@qfab.org) based on jjohnson mothur_toolsuite wrapper - </help> + <tests> + <test> + <param name="otu" value="reads2otus.rabund"> + <param name="label" value="0.3" /> + <param name="advanced" value="FALSE" /> + <param name="calc" value="chao,invsimpson,npshannon" /> + <output name="output" file="output.tabular" ftype="tabular" lines_diff="10" /> + </test> +</tests> </tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/collectorcurve/test-data/output.tabular Fri May 30 03:32:49 2014 -0400 @@ -0,0 +1,2 @@ +label nseqs coverage sobs chao chao_lci chao_hci invsimpson invsimpson_lci invsimpson_hci npshannon +0.03 1331.000000 0.711495 536.000000 1761.600000 1422.692820 2230.042544 52.757644 43.823911 66.266396 5.747034
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/collectorcurve/test-data/reads2otus.rabund Fri May 30 03:32:49 2014 -0400 @@ -0,0 +1,1 @@ +0.03 536 60 4 3 8 14 1 1 28 2 1 1 17 6 4 1 1 12 7 1 2 7 5 9 1 154 4 1 2 1 7 1 6 1 1 7 7 19 7 1 17 2 2 2 3 4 2 1 4 2 1 7 3 1 5 1 1 3 1 1 2 1 1 1 1 2 10 1 1 1 3 3 11 4 2 1 1 8 4 1 1 20 6 1 1 6 2 7 2 3 28 4 6 6 2 8 10 1 5 4 1 32 1 2 3 1 1 1 13 1 1 1 1 1 1 1 1 2 4 3 2 2 1 1 1 2 6 1 7 4 1 1 1 7 1 3 1 14 1 2 1 1 7 1 5 1 4 2 1 1 1 2 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 3 1 1 4 1 1 3 1 1 3 1 1 4 1 1 1 1 1 4 1 1 1 2 2 7 1 2 1 1 1 1 1 1 1 8 2 1 2 1 1 2 1 1 3 2 2 1 3 1 3 1 1 1 1 2 1 1 5 1 1 1 3 1 3 2 2 1 2 2 1 1 1 2 1 2 1 1 4 1 1 1 1 1 1 1 1 2 2 1 2 5 1 1 1 1 3 1 1 1 1 3 1 1 1 1 1 2 1 4 1 1 4 1 2 1 3 1 1 5 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 2 1 1 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 5 1 1 1 5 2 2 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1