annotate fasttree/README.txt @ 1:3641b4766e1e draft

Uploaded
author qfab
date Thu, 29 May 2014 23:56:31 -0400
parents b2b9795cc862
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
1 Galaxy wrappers for FastTree for Linux 64-bit
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
2 ================================================================================
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
3
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
4 FastTree infers approximately-maximum-likelihood phylogenetic trees from
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
5 alignments of nucleotide or protein sequences. FastTree can handle alignments
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
6 with up to a million of sequences in a reasonable amount of time and memory.
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
7 For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
8 RAxML 7. FastTree is open-source software.
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
9
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
10
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
11 Installation
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
12 ================================================================================
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
13
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
14 Galaxy will automatically install the required dependencies:
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
15 - FastTree v2.1.7
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
16
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
17 Please note, this FastTree v2.1.7 executable is just intended for Linux 64-bit!
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
18
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
19
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
20 Disclaimer
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
21 ================================================================================
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
22
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
23 This source code is provided by QFAB Bioinformatics "as is", in the hope
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
24 that it will be useful, and any express or implied warranties, including,
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
25 but not limited to, the implied warranties of merchantability and fitness
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
26 for a particular purpose are disclaimed.
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
27 IN NO EVENT SHALL QFAB BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
28 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
29 OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT(INCLUDING
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
30 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOURCE
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
31 CODE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
32
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
33
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
34 License
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
35 ================================================================================
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
36
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
37 This work by QFAB Bioinformatics (as part of the GVL project http://genome.edu.au)
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
38 is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
39 International License.
b2b9795cc862 Uploaded
qfab
parents:
diff changeset
40